miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12334 3' -53.1 NC_003324.1 + 49349 0.66 0.837944
Target:  5'- gCGGCGccaACaGCGGUGucGACGAucUGGGCGa -3'
miRNA:   3'- -GUCGU---UGaUGCCGCu-CUGCU--ACUCGU- -5'
12334 3' -53.1 NC_003324.1 + 53896 0.66 0.828841
Target:  5'- -cGCAGCc-CGGCGAGACcuuGGUGcAGCc -3'
miRNA:   3'- guCGUUGauGCCGCUCUG---CUAC-UCGu -5'
12334 3' -53.1 NC_003324.1 + 24998 0.66 0.828841
Target:  5'- -uGCGACcggGCGGCGugcuGGCGAUG-GUg -3'
miRNA:   3'- guCGUUGa--UGCCGCu---CUGCUACuCGu -5'
12334 3' -53.1 NC_003324.1 + 24701 0.66 0.828841
Target:  5'- uCGGUGACUuCGGCGccuaugGGACGAUGuacGGCc -3'
miRNA:   3'- -GUCGUUGAuGCCGC------UCUGCUAC---UCGu -5'
12334 3' -53.1 NC_003324.1 + 42690 0.66 0.823275
Target:  5'- cCGGCAACcGCuGGCGAggcaucaucccaucgGACGAUGcGGUAg -3'
miRNA:   3'- -GUCGUUGaUG-CCGCU---------------CUGCUAC-UCGU- -5'
12334 3' -53.1 NC_003324.1 + 38292 0.66 0.819523
Target:  5'- uCGGCAACUACGuGUucGACGAgGAGa- -3'
miRNA:   3'- -GUCGUUGAUGC-CGcuCUGCUaCUCgu -5'
12334 3' -53.1 NC_003324.1 + 33058 0.66 0.819523
Target:  5'- uCGGCAuugGCgACGGCGAG-CaGAUGcAGCGc -3'
miRNA:   3'- -GUCGU---UGaUGCCGCUCuG-CUAC-UCGU- -5'
12334 3' -53.1 NC_003324.1 + 21369 0.66 0.819523
Target:  5'- aGGCGGCgaacGCGGcCGAGAUGAaagcGGCAg -3'
miRNA:   3'- gUCGUUGa---UGCC-GCUCUGCUac--UCGU- -5'
12334 3' -53.1 NC_003324.1 + 37106 0.66 0.81
Target:  5'- aAGaCGGCUAUcagGGCGAuGACGA-GGGCGa -3'
miRNA:   3'- gUC-GUUGAUG---CCGCU-CUGCUaCUCGU- -5'
12334 3' -53.1 NC_003324.1 + 56657 0.66 0.81
Target:  5'- uCAGCGAUaGCGGCGuuauGGGCGgcG-GCAu -3'
miRNA:   3'- -GUCGUUGaUGCCGC----UCUGCuaCuCGU- -5'
12334 3' -53.1 NC_003324.1 + 4736 0.66 0.800284
Target:  5'- gCGGCuGCUACGGCGgaAGGcCGA--AGCAa -3'
miRNA:   3'- -GUCGuUGAUGCCGC--UCU-GCUacUCGU- -5'
12334 3' -53.1 NC_003324.1 + 31312 0.66 0.800284
Target:  5'- cCGGCGGCgcUGGCGcuGGCGG-GGGCAu -3'
miRNA:   3'- -GUCGUUGauGCCGCu-CUGCUaCUCGU- -5'
12334 3' -53.1 NC_003324.1 + 30133 0.66 0.800284
Target:  5'- -cGCGACcgGCGGCGuGAUGGgcGGCGg -3'
miRNA:   3'- guCGUUGa-UGCCGCuCUGCUacUCGU- -5'
12334 3' -53.1 NC_003324.1 + 14206 0.66 0.797333
Target:  5'- aCAGCAGCU-UGGCuuGGCGAcggaucaggcaaguUGGGCGa -3'
miRNA:   3'- -GUCGUUGAuGCCGcuCUGCU--------------ACUCGU- -5'
12334 3' -53.1 NC_003324.1 + 22093 0.67 0.790385
Target:  5'- gGGCAGgUucuCGGCGcgccAGACGAUcGAGCc -3'
miRNA:   3'- gUCGUUgAu--GCCGC----UCUGCUA-CUCGu -5'
12334 3' -53.1 NC_003324.1 + 54550 0.67 0.774196
Target:  5'- aAGCAAUgg-GGCGAGugGAagcccgucucugaaaUGGGCGc -3'
miRNA:   3'- gUCGUUGaugCCGCUCugCU---------------ACUCGU- -5'
12334 3' -53.1 NC_003324.1 + 32493 0.67 0.770085
Target:  5'- uCGGCGAUcACGGUGucGACGAUGucGCu -3'
miRNA:   3'- -GUCGUUGaUGCCGCu-CUGCUACu-CGu -5'
12334 3' -53.1 NC_003324.1 + 17547 0.67 0.759708
Target:  5'- uCGGC-GCgACGGCaGGACuuGGUGAGCAg -3'
miRNA:   3'- -GUCGuUGaUGCCGcUCUG--CUACUCGU- -5'
12334 3' -53.1 NC_003324.1 + 26926 0.67 0.759708
Target:  5'- gGGCAug-GCGGCGAucGACGAggcacucagcgGAGCGg -3'
miRNA:   3'- gUCGUugaUGCCGCU--CUGCUa----------CUCGU- -5'
12334 3' -53.1 NC_003324.1 + 24786 0.67 0.749195
Target:  5'- uGGaCGAagguCGGCGAGugGAaGGGCAa -3'
miRNA:   3'- gUC-GUUgau-GCCGCUCugCUaCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.