Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12334 | 3' | -53.1 | NC_003324.1 | + | 4736 | 0.66 | 0.800284 |
Target: 5'- gCGGCuGCUACGGCGgaAGGcCGA--AGCAa -3' miRNA: 3'- -GUCGuUGAUGCCGC--UCU-GCUacUCGU- -5' |
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12334 | 3' | -53.1 | NC_003324.1 | + | 14206 | 0.66 | 0.797333 |
Target: 5'- aCAGCAGCU-UGGCuuGGCGAcggaucaggcaaguUGGGCGa -3' miRNA: 3'- -GUCGUUGAuGCCGcuCUGCU--------------ACUCGU- -5' |
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12334 | 3' | -53.1 | NC_003324.1 | + | 14592 | 0.72 | 0.475519 |
Target: 5'- aAGCGGCcgGCGGCGcAGGCGGU-AGCGu -3' miRNA: 3'- gUCGUUGa-UGCCGC-UCUGCUAcUCGU- -5' |
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12334 | 3' | -53.1 | NC_003324.1 | + | 16520 | 0.71 | 0.554561 |
Target: 5'- gCAGCGgaucggccugugcguGCU-CGGCGAGAgGGUGAGgGg -3' miRNA: 3'- -GUCGU---------------UGAuGCCGCUCUgCUACUCgU- -5' |
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12334 | 3' | -53.1 | NC_003324.1 | + | 16649 | 1.09 | 0.00174 |
Target: 5'- uCAGCAACUACGGCGAGACGAUGAGCAg -3' miRNA: 3'- -GUCGUUGAUGCCGCUCUGCUACUCGU- -5' |
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12334 | 3' | -53.1 | NC_003324.1 | + | 17547 | 0.67 | 0.759708 |
Target: 5'- uCGGC-GCgACGGCaGGACuuGGUGAGCAg -3' miRNA: 3'- -GUCGuUGaUGCCGcUCUG--CUACUCGU- -5' |
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12334 | 3' | -53.1 | NC_003324.1 | + | 21084 | 0.68 | 0.69502 |
Target: 5'- uCGGCGcggccaucAUUGCGGCGAuccGACG-UGAGCu -3' miRNA: 3'- -GUCGU--------UGAUGCCGCU---CUGCuACUCGu -5' |
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12334 | 3' | -53.1 | NC_003324.1 | + | 21287 | 0.68 | 0.69502 |
Target: 5'- uCGGCAGCUcgaaagccagGCGGuUGAGcACGAUcgcGAGCAg -3' miRNA: 3'- -GUCGUUGA----------UGCC-GCUC-UGCUA---CUCGU- -5' |
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12334 | 3' | -53.1 | NC_003324.1 | + | 21369 | 0.66 | 0.819523 |
Target: 5'- aGGCGGCgaacGCGGcCGAGAUGAaagcGGCAg -3' miRNA: 3'- gUCGUUGa---UGCC-GCUCUGCUac--UCGU- -5' |
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12334 | 3' | -53.1 | NC_003324.1 | + | 22093 | 0.67 | 0.790385 |
Target: 5'- gGGCAGgUucuCGGCGcgccAGACGAUcGAGCc -3' miRNA: 3'- gUCGUUgAu--GCCGC----UCUGCUA-CUCGu -5' |
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12334 | 3' | -53.1 | NC_003324.1 | + | 24701 | 0.66 | 0.828841 |
Target: 5'- uCGGUGACUuCGGCGccuaugGGACGAUGuacGGCc -3' miRNA: 3'- -GUCGUUGAuGCCGC------UCUGCUAC---UCGu -5' |
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12334 | 3' | -53.1 | NC_003324.1 | + | 24786 | 0.67 | 0.749195 |
Target: 5'- uGGaCGAagguCGGCGAGugGAaGGGCAa -3' miRNA: 3'- gUC-GUUgau-GCCGCUCugCUaCUCGU- -5' |
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12334 | 3' | -53.1 | NC_003324.1 | + | 24998 | 0.66 | 0.828841 |
Target: 5'- -uGCGACcggGCGGCGugcuGGCGAUG-GUg -3' miRNA: 3'- guCGUUGa--UGCCGCu---CUGCUACuCGu -5' |
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12334 | 3' | -53.1 | NC_003324.1 | + | 26926 | 0.67 | 0.759708 |
Target: 5'- gGGCAug-GCGGCGAucGACGAggcacucagcgGAGCGg -3' miRNA: 3'- gUCGUugaUGCCGCU--CUGCUa----------CUCGU- -5' |
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12334 | 3' | -53.1 | NC_003324.1 | + | 30133 | 0.66 | 0.800284 |
Target: 5'- -cGCGACcgGCGGCGuGAUGGgcGGCGg -3' miRNA: 3'- guCGUUGa-UGCCGCuCUGCUacUCGU- -5' |
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12334 | 3' | -53.1 | NC_003324.1 | + | 31312 | 0.66 | 0.800284 |
Target: 5'- cCGGCGGCgcUGGCGcuGGCGG-GGGCAu -3' miRNA: 3'- -GUCGUUGauGCCGCu-CUGCUaCUCGU- -5' |
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12334 | 3' | -53.1 | NC_003324.1 | + | 32493 | 0.67 | 0.770085 |
Target: 5'- uCGGCGAUcACGGUGucGACGAUGucGCu -3' miRNA: 3'- -GUCGUUGaUGCCGCu-CUGCUACu-CGu -5' |
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12334 | 3' | -53.1 | NC_003324.1 | + | 33058 | 0.66 | 0.819523 |
Target: 5'- uCGGCAuugGCgACGGCGAG-CaGAUGcAGCGc -3' miRNA: 3'- -GUCGU---UGaUGCCGCUCuG-CUAC-UCGU- -5' |
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12334 | 3' | -53.1 | NC_003324.1 | + | 33432 | 0.68 | 0.72781 |
Target: 5'- cCGGCAACcACGcacCGGGACGAUGAcCAu -3' miRNA: 3'- -GUCGUUGaUGCc--GCUCUGCUACUcGU- -5' |
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12334 | 3' | -53.1 | NC_003324.1 | + | 34618 | 0.7 | 0.594454 |
Target: 5'- -cGCAGCUcCGG-GAGGCGcUGGGCGa -3' miRNA: 3'- guCGUUGAuGCCgCUCUGCuACUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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