Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12335 | 5' | -54.5 | NC_003324.1 | + | 5531 | 0.69 | 0.577915 |
Target: 5'- gCCGCCuGCCUacccagcgucgaUGCGGAgaagaacUCGGCGcCGCAg -3' miRNA: 3'- -GGCGG-UGGA------------ACGUUU-------AGCCGC-GUGUa -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 13084 | 0.69 | 0.534254 |
Target: 5'- aUGCCGCCcUGCAGAUCGccagccgcgaacaGCGCAgCGUu -3' miRNA: 3'- gGCGGUGGaACGUUUAGC-------------CGCGU-GUA- -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 7266 | 0.71 | 0.472209 |
Target: 5'- aCGCCAUCgaGC---UCGGCGCGCu- -3' miRNA: 3'- gGCGGUGGaaCGuuuAGCCGCGUGua -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 35603 | 0.71 | 0.452004 |
Target: 5'- -aGCCACCaacgucggUGCGcagaAGUCGGCGCugGa -3' miRNA: 3'- ggCGGUGGa-------ACGU----UUAGCCGCGugUa -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 55492 | 0.72 | 0.403662 |
Target: 5'- aCGCCACUguucaagGCGGGcuUCGGCGCugAa -3' miRNA: 3'- gGCGGUGGaa-----CGUUU--AGCCGCGugUa -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 55111 | 0.73 | 0.341751 |
Target: 5'- gCCGuCCGCCUUGCcugccCGGCGCgACAc -3' miRNA: 3'- -GGC-GGUGGAACGuuua-GCCGCG-UGUa -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 41785 | 0.73 | 0.325368 |
Target: 5'- aCC-CCucuuACCUUGCGGAUUGGCGCAUc- -3' miRNA: 3'- -GGcGG----UGGAACGUUUAGCCGCGUGua -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 16980 | 1.07 | 0.001539 |
Target: 5'- gCCGCCACCUUGCAAAUCGGCGCACAUc -3' miRNA: 3'- -GGCGGUGGAACGUUUAGCCGCGUGUA- -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 42381 | 0.68 | 0.590072 |
Target: 5'- cCCGgCACgUgGCAGG-CGGCGCACu- -3' miRNA: 3'- -GGCgGUGgAaCGUUUaGCCGCGUGua -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 35635 | 0.68 | 0.6457 |
Target: 5'- gCGCagGCCUUGCAGAUCcGCuCGCAg -3' miRNA: 3'- gGCGg-UGGAACGUUUAGcCGcGUGUa -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 24072 | 0.67 | 0.656829 |
Target: 5'- aCCGCCGCCcuaccaGCGcGUCGaGCGCGa-- -3' miRNA: 3'- -GGCGGUGGaa----CGUuUAGC-CGCGUgua -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 54363 | 0.66 | 0.754569 |
Target: 5'- aCGCagGCCUUccaGCAAcggcUCGGCGCugAUg -3' miRNA: 3'- gGCGg-UGGAA---CGUUu---AGCCGCGugUA- -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 2506 | 0.66 | 0.753524 |
Target: 5'- gCCGCCGgCgucgGCGGcuucaucAUCGGCGUugGc -3' miRNA: 3'- -GGCGGUgGaa--CGUU-------UAGCCGCGugUa -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 20868 | 0.66 | 0.74828 |
Target: 5'- uCCGCCGCCUcGCcaacguuccggCGGUGgACAa -3' miRNA: 3'- -GGCGGUGGAaCGuuua-------GCCGCgUGUa -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 24546 | 0.66 | 0.743005 |
Target: 5'- aCUGUCACCcuccccgagaaugUccaggacgUGCAGGUCGGCGCAa-- -3' miRNA: 3'- -GGCGGUGG-------------A--------ACGUUUAGCCGCGUgua -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 48471 | 0.66 | 0.73344 |
Target: 5'- gCCGCaGCCgaGCAGGUaGGCGC-CAa -3' miRNA: 3'- -GGCGgUGGaaCGUUUAgCCGCGuGUa -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 23215 | 0.66 | 0.73344 |
Target: 5'- uUGCCGCCaUUGCA--UCGGCGauggaaaagcgaCGCAUc -3' miRNA: 3'- gGCGGUGG-AACGUuuAGCCGC------------GUGUA- -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 25331 | 0.66 | 0.723791 |
Target: 5'- cCCGUCGCCUUGgcuuuaagggcggcCAggugcucgaaccgucAGUCGGCGCAgGc -3' miRNA: 3'- -GGCGGUGGAAC--------------GU---------------UUAGCCGCGUgUa -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 7413 | 0.67 | 0.700997 |
Target: 5'- aUCGUCAgCgUGCcc-UCGGCGCGCGg -3' miRNA: 3'- -GGCGGUgGaACGuuuAGCCGCGUGUa -5' |
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12335 | 5' | -54.5 | NC_003324.1 | + | 9734 | 0.67 | 0.700997 |
Target: 5'- aCGCCGCCcaGCGcGUUGGCGUugccgGCGg -3' miRNA: 3'- gGCGGUGGaaCGUuUAGCCGCG-----UGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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