miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12335 5' -54.5 NC_003324.1 + 29471 0.7 0.503341
Target:  5'- aCgGCCGCCUggcUGCGGgcgcGUCGG-GCGCAUc -3'
miRNA:   3'- -GgCGGUGGA---ACGUU----UAGCCgCGUGUA- -5'
12335 5' -54.5 NC_003324.1 + 39747 0.66 0.764947
Target:  5'- -gGCgGCCUUGguGucCGGCgGCACGUg -3'
miRNA:   3'- ggCGgUGGAACguUuaGCCG-CGUGUA- -5'
12335 5' -54.5 NC_003324.1 + 21073 0.66 0.762882
Target:  5'- aCGCUGCCUUGUcggccgccgCGGCGCGu-- -3'
miRNA:   3'- gGCGGUGGAACGuuua-----GCCGCGUgua -5'
12335 5' -54.5 NC_003324.1 + 35719 0.66 0.761847
Target:  5'- cCCGUgACCUUGCGGAuacgcuucacgagcUCGuCGCGCu- -3'
miRNA:   3'- -GGCGgUGGAACGUUU--------------AGCcGCGUGua -5'
12335 5' -54.5 NC_003324.1 + 14060 0.66 0.754569
Target:  5'- gCGCCAUCgcccgauccGCAGAUCGGCaaagcaGCGCu- -3'
miRNA:   3'- gGCGGUGGaa-------CGUUUAGCCG------CGUGua -5'
12335 5' -54.5 NC_003324.1 + 49720 0.66 0.744063
Target:  5'- cCCGCUGCCcUGCAGGcgggaugguUCagcgGGCGCACc- -3'
miRNA:   3'- -GGCGGUGGaACGUUU---------AG----CCGCGUGua -5'
12335 5' -54.5 NC_003324.1 + 10183 0.66 0.744063
Target:  5'- cCCGUCAgCUucggcuagUGCucAUCGGCGC-CAa -3'
miRNA:   3'- -GGCGGUgGA--------ACGuuUAGCCGCGuGUa -5'
12335 5' -54.5 NC_003324.1 + 57200 0.66 0.73344
Target:  5'- gCGCCGugguuCCaugugguaUUGCAAGcUGGCGCACAa -3'
miRNA:   3'- gGCGGU-----GG--------AACGUUUaGCCGCGUGUa -5'
12335 5' -54.5 NC_003324.1 + 50003 0.66 0.722714
Target:  5'- aUCGCCGCCcacaAGAUCGGCaaGCGCu- -3'
miRNA:   3'- -GGCGGUGGaacgUUUAGCCG--CGUGua -5'
12335 5' -54.5 NC_003324.1 + 51546 0.66 0.711896
Target:  5'- gCUGCCGUCUUGCGGcaaCGGCGUucGCAa -3'
miRNA:   3'- -GGCGGUGGAACGUUua-GCCGCG--UGUa -5'
12335 5' -54.5 NC_003324.1 + 37995 0.67 0.700997
Target:  5'- gCgGCCauGCCggaGCGGuugCGGCGCACGg -3'
miRNA:   3'- -GgCGG--UGGaa-CGUUua-GCCGCGUGUa -5'
12335 5' -54.5 NC_003324.1 + 40254 0.69 0.535333
Target:  5'- aCUGCCGCCUUGCGugcGGUCcGGgGCuugGCGg -3'
miRNA:   3'- -GGCGGUGGAACGU---UUAG-CCgCG---UGUa -5'
12335 5' -54.5 NC_003324.1 + 34411 0.68 0.590072
Target:  5'- gCCGCCGuCCUcgGCAucggugauGUCGGCcgacgGCACAUu -3'
miRNA:   3'- -GGCGGU-GGAa-CGUu-------UAGCCG-----CGUGUA- -5'
12335 5' -54.5 NC_003324.1 + 27300 0.68 0.598942
Target:  5'- cCCGCC-CCUUGCcuucgcgugCGGCGaCAUAa -3'
miRNA:   3'- -GGCGGuGGAACGuuua-----GCCGC-GUGUa -5'
12335 5' -54.5 NC_003324.1 + 8427 0.68 0.611168
Target:  5'- uCCGCCGgC-UGCAGGUgcaggcggauuugCGGCGCAUg- -3'
miRNA:   3'- -GGCGGUgGaACGUUUA-------------GCCGCGUGua -5'
12335 5' -54.5 NC_003324.1 + 4536 0.67 0.672367
Target:  5'- aCGCCACCgacaagaugagccGCGccguGAUCGaGCGCGCGc -3'
miRNA:   3'- gGCGGUGGaa-----------CGU----UUAGC-CGCGUGUa -5'
12335 5' -54.5 NC_003324.1 + 49881 0.67 0.679004
Target:  5'- -aGCCGgCggGCAAagaucgcugcGUCGGCGCGCu- -3'
miRNA:   3'- ggCGGUgGaaCGUU----------UAGCCGCGUGua -5'
12335 5' -54.5 NC_003324.1 + 44325 0.67 0.690029
Target:  5'- gCCGauaGCCUcUGCAGccaCGGCGCGCGc -3'
miRNA:   3'- -GGCgg-UGGA-ACGUUua-GCCGCGUGUa -5'
12335 5' -54.5 NC_003324.1 + 16980 1.07 0.001539
Target:  5'- gCCGCCACCUUGCAAAUCGGCGCACAUc -3'
miRNA:   3'- -GGCGGUGGAACGUUUAGCCGCGUGUA- -5'
12335 5' -54.5 NC_003324.1 + 54363 0.66 0.754569
Target:  5'- aCGCagGCCUUccaGCAAcggcUCGGCGCugAUg -3'
miRNA:   3'- gGCGg-UGGAA---CGUUu---AGCCGCGugUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.