Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12336 | 5' | -54.3 | NC_003324.1 | + | 15735 | 0.7 | 0.546116 |
Target: 5'- cGCGUcaUCGAGcGCGCCG-GGGCCGUc- -3' miRNA: 3'- -CGCG--AGUUCuUGCGGCuUUCGGCGca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 24428 | 0.7 | 0.524711 |
Target: 5'- gGCGUUCccGAaugacACGUCGAAGGaCCGCGUu -3' miRNA: 3'- -CGCGAGuuCU-----UGCGGCUUUC-GGCGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 27202 | 0.7 | 0.546116 |
Target: 5'- cGgGCUCAAGAgcgagagcgaccGCGCUGGuguGCUGCGc -3' miRNA: 3'- -CgCGAGUUCU------------UGCGGCUuu-CGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 35310 | 0.7 | 0.514128 |
Target: 5'- cGCGC-CGgcGGAuuGCGCCGGcuGCUGCGg -3' miRNA: 3'- -CGCGaGU--UCU--UGCGGCUuuCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 14092 | 0.7 | 0.556925 |
Target: 5'- aGCGCUCAAGGAaGCgGAGAcCgGCGa -3' miRNA: 3'- -CGCGAGUUCUUgCGgCUUUcGgCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 8332 | 0.7 | 0.556925 |
Target: 5'- gGCGCUCGuuacgguGAcCGUCGGcgggGAGCUGCGUc -3' miRNA: 3'- -CGCGAGUu------CUuGCGGCU----UUCGGCGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 54967 | 0.69 | 0.583096 |
Target: 5'- uCGCUUgcGGGCGCCGAcauucgcgagcauccGGGCCuGCGg -3' miRNA: 3'- cGCGAGuuCUUGCGGCU---------------UUCGG-CGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 5115 | 0.69 | 0.58968 |
Target: 5'- gGUGUcgaUCGAGAucACGCCGu-AGUCGCGg -3' miRNA: 3'- -CGCG---AGUUCU--UGCGGCuuUCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 6578 | 0.69 | 0.58968 |
Target: 5'- aCGCUCAGGA--GCCGAAcuGGCacacaGCGUc -3' miRNA: 3'- cGCGAGUUCUugCGGCUU--UCGg----CGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 27351 | 0.69 | 0.622758 |
Target: 5'- cGCGC-CAccAACG-CGGAAGCCGUGUu -3' miRNA: 3'- -CGCGaGUucUUGCgGCUUUCGGCGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 32470 | 0.69 | 0.567793 |
Target: 5'- cGCGC-CGAGGugGUgCGAGAGCC-CGa -3' miRNA: 3'- -CGCGaGUUCUugCG-GCUUUCGGcGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 26130 | 0.69 | 0.58968 |
Target: 5'- cGCGCUUgagcuAGAGCGCCGgcAGaCCG-GUg -3' miRNA: 3'- -CGCGAGu----UCUUGCGGCuuUC-GGCgCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 19090 | 0.69 | 0.611711 |
Target: 5'- cGCGUUCGAGGccaGCCGcgugcAGCCGcCGUa -3' miRNA: 3'- -CGCGAGUUCUug-CGGCuu---UCGGC-GCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 22122 | 0.69 | 0.611711 |
Target: 5'- aUGCUCAAGGucaugucggACGCgCGcAAGGCUGCGc -3' miRNA: 3'- cGCGAGUUCU---------UGCG-GC-UUUCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 13297 | 0.69 | 0.563439 |
Target: 5'- gGCGUUCAacgaucGGGACGCCGAaaagcuuGaggugcucgacggcAGCCGCGc -3' miRNA: 3'- -CGCGAGU------UCUUGCGGCU-------U--------------UCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 44015 | 0.69 | 0.600682 |
Target: 5'- cCGC-CGGGAucAUGCCGAgcGCUGCGa -3' miRNA: 3'- cGCGaGUUCU--UGCGGCUuuCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 42015 | 0.68 | 0.633813 |
Target: 5'- aGCGCaUCGGGAACGCgguaccucCGGAuGCgGCGa -3' miRNA: 3'- -CGCG-AGUUCUUGCG--------GCUUuCGgCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 21220 | 0.68 | 0.666929 |
Target: 5'- uCGCUCAcuGACgagGCCGAGAuGCUGCGc -3' miRNA: 3'- cGCGAGUucUUG---CGGCUUU-CGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 23279 | 0.68 | 0.677916 |
Target: 5'- -gGCUC-AGAugcGCGCCGucauAGCUGCGc -3' miRNA: 3'- cgCGAGuUCU---UGCGGCuu--UCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 16128 | 0.68 | 0.666929 |
Target: 5'- uGCGC---AGGGCGCuucgguagCGggGGCCGCGc -3' miRNA: 3'- -CGCGaguUCUUGCG--------GCuuUCGGCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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