miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12336 5' -54.3 NC_003324.1 + 17211 0.74 0.334877
Target:  5'- gGCGUUCuuGAGCGCCGAGuuCCGCu- -3'
miRNA:   3'- -CGCGAGuuCUUGCGGCUUucGGCGca -5'
12336 5' -54.3 NC_003324.1 + 15364 0.73 0.395446
Target:  5'- uGCGCgCGAGGACGCUGAauacGAGCgcaGCGa -3'
miRNA:   3'- -CGCGaGUUCUUGCGGCU----UUCGg--CGCa -5'
12336 5' -54.3 NC_003324.1 + 57276 0.72 0.452675
Target:  5'- uGCGCUCAGaugcucAACGCCGGucguGCCGCc- -3'
miRNA:   3'- -CGCGAGUUc-----UUGCGGCUuu--CGGCGca -5'
12336 5' -54.3 NC_003324.1 + 21199 0.71 0.461645
Target:  5'- cGUGCUCAAccgccuggcuuucGAGCuGCCGAAGGCgacggCGCGUu -3'
miRNA:   3'- -CGCGAGUU-------------CUUG-CGGCUUUCG-----GCGCA- -5'
12336 5' -54.3 NC_003324.1 + 26877 0.71 0.482931
Target:  5'- -gGCUCAAGGgugACGCCGGGcuccauGUCGCGa -3'
miRNA:   3'- cgCGAGUUCU---UGCGGCUUu-----CGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 23987 0.71 0.482931
Target:  5'- cGCGCUCGAc-GCGCUGGuaGGGCgGCGg -3'
miRNA:   3'- -CGCGAGUUcuUGCGGCU--UUCGgCGCa -5'
12336 5' -54.3 NC_003324.1 + 53732 0.71 0.493232
Target:  5'- aGCGCguaCAGGAA--CCGGAGGCCGCu- -3'
miRNA:   3'- -CGCGa--GUUCUUgcGGCUUUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 14545 0.71 0.503633
Target:  5'- gGCGCUCAAG---GCCGAcguggucaacauGGGUCGCGg -3'
miRNA:   3'- -CGCGAGUUCuugCGGCU------------UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 35310 0.7 0.514128
Target:  5'- cGCGC-CGgcGGAuuGCGCCGGcuGCUGCGg -3'
miRNA:   3'- -CGCGaGU--UCU--UGCGGCUuuCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 14092 0.7 0.556925
Target:  5'- aGCGCUCAAGGAaGCgGAGAcCgGCGa -3'
miRNA:   3'- -CGCGAGUUCUUgCGgCUUUcGgCGCa -5'
12336 5' -54.3 NC_003324.1 + 8332 0.7 0.556925
Target:  5'- gGCGCUCGuuacgguGAcCGUCGGcgggGAGCUGCGUc -3'
miRNA:   3'- -CGCGAGUu------CUuGCGGCU----UUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 13297 0.69 0.563439
Target:  5'- gGCGUUCAacgaucGGGACGCCGAaaagcuuGaggugcucgacggcAGCCGCGc -3'
miRNA:   3'- -CGCGAGU------UCUUGCGGCU-------U--------------UCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 6578 0.69 0.58968
Target:  5'- aCGCUCAGGA--GCCGAAcuGGCacacaGCGUc -3'
miRNA:   3'- cGCGAGUUCUugCGGCUU--UCGg----CGCA- -5'
12336 5' -54.3 NC_003324.1 + 19090 0.69 0.611711
Target:  5'- cGCGUUCGAGGccaGCCGcgugcAGCCGcCGUa -3'
miRNA:   3'- -CGCGAGUUCUug-CGGCuu---UCGGC-GCA- -5'
12336 5' -54.3 NC_003324.1 + 5115 0.69 0.58968
Target:  5'- gGUGUcgaUCGAGAucACGCCGu-AGUCGCGg -3'
miRNA:   3'- -CGCG---AGUUCU--UGCGGCuuUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 26130 0.69 0.58968
Target:  5'- cGCGCUUgagcuAGAGCGCCGgcAGaCCG-GUg -3'
miRNA:   3'- -CGCGAGu----UCUUGCGGCuuUC-GGCgCA- -5'
12336 5' -54.3 NC_003324.1 + 54967 0.69 0.583096
Target:  5'- uCGCUUgcGGGCGCCGAcauucgcgagcauccGGGCCuGCGg -3'
miRNA:   3'- cGCGAGuuCUUGCGGCU---------------UUCGG-CGCa -5'
12336 5' -54.3 NC_003324.1 + 32470 0.69 0.567793
Target:  5'- cGCGC-CGAGGugGUgCGAGAGCC-CGa -3'
miRNA:   3'- -CGCGaGUUCUugCG-GCUUUCGGcGCa -5'
12336 5' -54.3 NC_003324.1 + 21396 0.7 0.556925
Target:  5'- cGCGCgaaaUCGAGGAuauCGCCGGcgAGGCgGCGa -3'
miRNA:   3'- -CGCG----AGUUCUU---GCGGCU--UUCGgCGCa -5'
12336 5' -54.3 NC_003324.1 + 15735 0.7 0.546116
Target:  5'- cGCGUcaUCGAGcGCGCCG-GGGCCGUc- -3'
miRNA:   3'- -CGCG--AGUUCuUGCGGCuUUCGGCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.