miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12336 5' -54.3 NC_003324.1 + 11481 0.75 0.281377
Target:  5'- uGCGgUCAAGAGCGCCGucGAGaCUGCa- -3'
miRNA:   3'- -CGCgAGUUCUUGCGGCu-UUC-GGCGca -5'
12336 5' -54.3 NC_003324.1 + 17211 0.74 0.334877
Target:  5'- gGCGUUCuuGAGCGCCGAGuuCCGCu- -3'
miRNA:   3'- -CGCGAGuuCUUGCGGCUUucGGCGca -5'
12336 5' -54.3 NC_003324.1 + 15364 0.73 0.395446
Target:  5'- uGCGCgCGAGGACGCUGAauacGAGCgcaGCGa -3'
miRNA:   3'- -CGCGaGUUCUUGCGGCU----UUCGg--CGCa -5'
12336 5' -54.3 NC_003324.1 + 57276 0.72 0.452675
Target:  5'- uGCGCUCAGaugcucAACGCCGGucguGCCGCc- -3'
miRNA:   3'- -CGCGAGUUc-----UUGCGGCUuu--CGGCGca -5'
12336 5' -54.3 NC_003324.1 + 21199 0.71 0.461645
Target:  5'- cGUGCUCAAccgccuggcuuucGAGCuGCCGAAGGCgacggCGCGUu -3'
miRNA:   3'- -CGCGAGUU-------------CUUG-CGGCUUUCG-----GCGCA- -5'
12336 5' -54.3 NC_003324.1 + 26877 0.71 0.482931
Target:  5'- -gGCUCAAGGgugACGCCGGGcuccauGUCGCGa -3'
miRNA:   3'- cgCGAGUUCU---UGCGGCUUu-----CGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 23987 0.71 0.482931
Target:  5'- cGCGCUCGAc-GCGCUGGuaGGGCgGCGg -3'
miRNA:   3'- -CGCGAGUUcuUGCGGCU--UUCGgCGCa -5'
12336 5' -54.3 NC_003324.1 + 13297 0.69 0.563439
Target:  5'- gGCGUUCAacgaucGGGACGCCGAaaagcuuGaggugcucgacggcAGCCGCGc -3'
miRNA:   3'- -CGCGAGU------UCUUGCGGCU-------U--------------UCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 8332 0.7 0.556925
Target:  5'- gGCGCUCGuuacgguGAcCGUCGGcgggGAGCUGCGUc -3'
miRNA:   3'- -CGCGAGUu------CUuGCGGCU----UUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 14092 0.7 0.556925
Target:  5'- aGCGCUCAAGGAaGCgGAGAcCgGCGa -3'
miRNA:   3'- -CGCGAGUUCUUgCGgCUUUcGgCGCa -5'
12336 5' -54.3 NC_003324.1 + 35310 0.7 0.514128
Target:  5'- cGCGC-CGgcGGAuuGCGCCGGcuGCUGCGg -3'
miRNA:   3'- -CGCGaGU--UCU--UGCGGCUuuCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 14545 0.71 0.503633
Target:  5'- gGCGCUCAAG---GCCGAcguggucaacauGGGUCGCGg -3'
miRNA:   3'- -CGCGAGUUCuugCGGCU------------UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 53732 0.71 0.493232
Target:  5'- aGCGCguaCAGGAA--CCGGAGGCCGCu- -3'
miRNA:   3'- -CGCGa--GUUCUUgcGGCUUUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 51661 0.67 0.721312
Target:  5'- uUGCUCGGGAAUaCCGAAGGCgccuuacccuUGCGa -3'
miRNA:   3'- cGCGAGUUCUUGcGGCUUUCG----------GCGCa -5'
12336 5' -54.3 NC_003324.1 + 14600 0.67 0.731967
Target:  5'- aGCGCcuugUCGcGGACGCCcu--GCCGCGc -3'
miRNA:   3'- -CGCG----AGUuCUUGCGGcuuuCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 24147 0.67 0.736201
Target:  5'- aGCGCaccggCGAGAAgguaaagcccgccagUGCCGAgaAGGCCGCc- -3'
miRNA:   3'- -CGCGa----GUUCUU---------------GCGGCU--UUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 47794 0.66 0.763279
Target:  5'- uGCGguuCUCAAGcagcauguCGUCGAggAGGCCGCGa -3'
miRNA:   3'- -CGC---GAGUUCuu------GCGGCU--UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 12741 0.66 0.763279
Target:  5'- uGCGUUCGccAG-ACGCCGAAAgGuuGuCGUa -3'
miRNA:   3'- -CGCGAGU--UCuUGCGGCUUU-CggC-GCA- -5'
12336 5' -54.3 NC_003324.1 + 5174 0.66 0.783494
Target:  5'- gGCGCagaucgUCGAucGCGCCGcuuaagcuaucAGGCCGCGUu -3'
miRNA:   3'- -CGCG------AGUUcuUGCGGCu----------UUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 17283 1.09 0.001391
Target:  5'- gGCGCUCAAGAACGCCGAAAGCCGCGUc -3'
miRNA:   3'- -CGCGAGUUCUUGCGGCUUUCGGCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.