miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12336 5' -54.3 NC_003324.1 + 32470 0.69 0.567793
Target:  5'- cGCGC-CGAGGugGUgCGAGAGCC-CGa -3'
miRNA:   3'- -CGCGaGUUCUugCG-GCUUUCGGcGCa -5'
12336 5' -54.3 NC_003324.1 + 21396 0.7 0.556925
Target:  5'- cGCGCgaaaUCGAGGAuauCGCCGGcgAGGCgGCGa -3'
miRNA:   3'- -CGCG----AGUUCUU---GCGGCU--UUCGgCGCa -5'
12336 5' -54.3 NC_003324.1 + 15735 0.7 0.546116
Target:  5'- cGCGUcaUCGAGcGCGCCG-GGGCCGUc- -3'
miRNA:   3'- -CGCG--AGUUCuUGCGGCuUUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 27202 0.7 0.546116
Target:  5'- cGgGCUCAAGAgcgagagcgaccGCGCUGGuguGCUGCGc -3'
miRNA:   3'- -CgCGAGUUCU------------UGCGGCUuu-CGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 51765 0.7 0.534306
Target:  5'- gGCGCUCGAcgcGAACGUCGGucacgaucaggguAAGgCGCGa -3'
miRNA:   3'- -CGCGAGUU---CUUGCGGCU-------------UUCgGCGCa -5'
12336 5' -54.3 NC_003324.1 + 24428 0.7 0.524711
Target:  5'- gGCGUUCccGAaugacACGUCGAAGGaCCGCGUu -3'
miRNA:   3'- -CGCGAGuuCU-----UGCGGCUUUC-GGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 21220 0.68 0.666929
Target:  5'- uCGCUCAcuGACgagGCCGAGAuGCUGCGc -3'
miRNA:   3'- cGCGAGUucUUG---CGGCUUU-CGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 26203 0.68 0.666929
Target:  5'- aCGgUCGAGAucagguaGCCGAAGGCC-CGUu -3'
miRNA:   3'- cGCgAGUUCUug-----CGGCUUUCGGcGCA- -5'
12336 5' -54.3 NC_003324.1 + 5174 0.66 0.783494
Target:  5'- gGCGCagaucgUCGAucGCGCCGcuuaagcuaucAGGCCGCGUu -3'
miRNA:   3'- -CGCG------AGUUcuUGCGGCu----------UUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 12741 0.66 0.763279
Target:  5'- uGCGUUCGccAG-ACGCCGAAAgGuuGuCGUa -3'
miRNA:   3'- -CGCGAGU--UCuUGCGGCUUU-CggC-GCA- -5'
12336 5' -54.3 NC_003324.1 + 47794 0.66 0.763279
Target:  5'- uGCGguuCUCAAGcagcauguCGUCGAggAGGCCGCGa -3'
miRNA:   3'- -CGC---GAGUUCuu------GCGGCU--UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 24147 0.67 0.736201
Target:  5'- aGCGCaccggCGAGAAgguaaagcccgccagUGCCGAgaAGGCCGCc- -3'
miRNA:   3'- -CGCGa----GUUCUU---------------GCGGCU--UUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 14600 0.67 0.731967
Target:  5'- aGCGCcuugUCGcGGACGCCcu--GCCGCGc -3'
miRNA:   3'- -CGCG----AGUuCUUGCGGcuuuCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 51661 0.67 0.721312
Target:  5'- uUGCUCGGGAAUaCCGAAGGCgccuuacccuUGCGa -3'
miRNA:   3'- cGCGAGUUCUUGcGGCUUUCG----------GCGCa -5'
12336 5' -54.3 NC_003324.1 + 28689 0.67 0.721312
Target:  5'- cGgGCcaCGAGGGCGacagcgggCGGAAGCCGCGa -3'
miRNA:   3'- -CgCGa-GUUCUUGCg-------GCUUUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 29026 0.67 0.710568
Target:  5'- uUGCUCAAGcAGCGCCaGgcGGCaCGCu- -3'
miRNA:   3'- cGCGAGUUC-UUGCGG-CuuUCG-GCGca -5'
12336 5' -54.3 NC_003324.1 + 26255 0.67 0.699747
Target:  5'- cCGCagCGAGAcCGCCGAcagaaugaugcAGGCCGCc- -3'
miRNA:   3'- cGCGa-GUUCUuGCGGCU-----------UUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 18906 0.67 0.688858
Target:  5'- gGCGUgaUgGAGAcugGCGCCGAccuucGCCGCGc -3'
miRNA:   3'- -CGCG--AgUUCU---UGCGGCUuu---CGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 31128 0.67 0.688858
Target:  5'- aGCGCgucagCAGGAguugaACGCCGA---CCGCGc -3'
miRNA:   3'- -CGCGa----GUUCU-----UGCGGCUuucGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 50626 0.67 0.688858
Target:  5'- uGCGCUCGgcgucgagcAGGucaACGCgGGugcuGGCUGCGUg -3'
miRNA:   3'- -CGCGAGU---------UCU---UGCGgCUu---UCGGCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.