miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12336 5' -54.3 NC_003324.1 + 26877 0.71 0.482931
Target:  5'- -gGCUCAAGGgugACGCCGGGcuccauGUCGCGa -3'
miRNA:   3'- cgCGAGUUCU---UGCGGCUUu-----CGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 27202 0.7 0.546116
Target:  5'- cGgGCUCAAGAgcgagagcgaccGCGCUGGuguGCUGCGc -3'
miRNA:   3'- -CgCGAGUUCU------------UGCGGCUuu-CGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 27351 0.69 0.622758
Target:  5'- cGCGC-CAccAACG-CGGAAGCCGUGUu -3'
miRNA:   3'- -CGCGaGUucUUGCgGCUUUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 28193 0.67 0.696486
Target:  5'- uGgGCUCGGGcagggcguuaGACGgCGAagucgcggcuucguGAGCCGCGUc -3'
miRNA:   3'- -CgCGAGUUC----------UUGCgGCU--------------UUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 28689 0.67 0.721312
Target:  5'- cGgGCcaCGAGGGCGacagcgggCGGAAGCCGCGa -3'
miRNA:   3'- -CgCGa-GUUCUUGCg-------GCUUUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 29026 0.67 0.710568
Target:  5'- uUGCUCAAGcAGCGCCaGgcGGCaCGCu- -3'
miRNA:   3'- cGCGAGUUC-UUGCGG-CuuUCG-GCGca -5'
12336 5' -54.3 NC_003324.1 + 31128 0.67 0.688858
Target:  5'- aGCGCgucagCAGGAguugaACGCCGA---CCGCGc -3'
miRNA:   3'- -CGCGa----GUUCU-----UGCGGCUuucGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 31239 0.67 0.699747
Target:  5'- aGCGC-CA---GCGCCGccGGCCGCa- -3'
miRNA:   3'- -CGCGaGUucuUGCGGCuuUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 32470 0.69 0.567793
Target:  5'- cGCGC-CGAGGugGUgCGAGAGCC-CGa -3'
miRNA:   3'- -CGCGaGUUCUugCG-GCUUUCGGcGCa -5'
12336 5' -54.3 NC_003324.1 + 33407 0.66 0.77346
Target:  5'- aCGCUUGcgauGAACGCCc-GAGCCGCu- -3'
miRNA:   3'- cGCGAGUu---CUUGCGGcuUUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 35310 0.7 0.514128
Target:  5'- cGCGC-CGgcGGAuuGCGCCGGcuGCUGCGg -3'
miRNA:   3'- -CGCGaGU--UCU--UGCGGCUuuCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 42015 0.68 0.633813
Target:  5'- aGCGCaUCGGGAACGCgguaccucCGGAuGCgGCGa -3'
miRNA:   3'- -CGCG-AGUUCUUGCG--------GCUUuCGgCGCa -5'
12336 5' -54.3 NC_003324.1 + 43795 0.78 0.189832
Target:  5'- gGUGC-CGGGAACGCCGGcAAGgCGCGUg -3'
miRNA:   3'- -CGCGaGUUCUUGCGGCU-UUCgGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 44015 0.69 0.600682
Target:  5'- cCGC-CGGGAucAUGCCGAgcGCUGCGa -3'
miRNA:   3'- cGCGaGUUCU--UGCGGCUuuCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 44434 0.68 0.644867
Target:  5'- gGCGC-CGAGAcuucgguCGCUGAuGGCCgGCGUu -3'
miRNA:   3'- -CGCGaGUUCUu------GCGGCUuUCGG-CGCA- -5'
12336 5' -54.3 NC_003324.1 + 45859 0.67 0.742521
Target:  5'- gGCGC---GGGGCGCCuGAugcgAGGCCGUGa -3'
miRNA:   3'- -CGCGaguUCUUGCGG-CU----UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 47794 0.66 0.763279
Target:  5'- uGCGguuCUCAAGcagcauguCGUCGAggAGGCCGCGa -3'
miRNA:   3'- -CGC---GAGUUCuu------GCGGCU--UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 48770 0.66 0.757104
Target:  5'- aGCGCUCAAGGuCGCCccuucguauuucuucGAcAAGCCGg-- -3'
miRNA:   3'- -CGCGAGUUCUuGCGG---------------CU-UUCGGCgca -5'
12336 5' -54.3 NC_003324.1 + 49073 0.67 0.742521
Target:  5'- -gGCUCugcaccGGgGCCGAAAGCgGCGUc -3'
miRNA:   3'- cgCGAGuuc---UUgCGGCUUUCGgCGCA- -5'
12336 5' -54.3 NC_003324.1 + 50626 0.67 0.688858
Target:  5'- uGCGCUCGgcgucgagcAGGucaACGCgGGugcuGGCUGCGUg -3'
miRNA:   3'- -CGCGAGU---------UCU---UGCGgCUu---UCGGCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.