miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12336 5' -54.3 NC_003324.1 + 21220 0.68 0.666929
Target:  5'- uCGCUCAcuGACgagGCCGAGAuGCUGCGc -3'
miRNA:   3'- cGCGAGUucUUG---CGGCUUU-CGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 21199 0.71 0.461645
Target:  5'- cGUGCUCAAccgccuggcuuucGAGCuGCCGAAGGCgacggCGCGUu -3'
miRNA:   3'- -CGCGAGUU-------------CUUG-CGGCUUUCG-----GCGCA- -5'
12336 5' -54.3 NC_003324.1 + 20991 0.68 0.655909
Target:  5'- -aGCUCAcgucGGAuCGCCGcaaugauGGCCGCGc -3'
miRNA:   3'- cgCGAGU----UCUuGCGGCuu-----UCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 19090 0.69 0.611711
Target:  5'- cGCGUUCGAGGccaGCCGcgugcAGCCGcCGUa -3'
miRNA:   3'- -CGCGAGUUCUug-CGGCuu---UCGGC-GCA- -5'
12336 5' -54.3 NC_003324.1 + 18906 0.67 0.688858
Target:  5'- gGCGUgaUgGAGAcugGCGCCGAccuucGCCGCGc -3'
miRNA:   3'- -CGCG--AgUUCU---UGCGGCUuu---CGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 18239 0.66 0.793369
Target:  5'- gGCGgUCAGGuugccauCGaCGAcaGAGCCGCGa -3'
miRNA:   3'- -CGCgAGUUCuu-----GCgGCU--UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 17909 0.73 0.395446
Target:  5'- gGCGUUCAAGGGCGacaccCCGAAugcgcGCCGUGa -3'
miRNA:   3'- -CGCGAGUUCUUGC-----GGCUUu----CGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 17283 1.09 0.001391
Target:  5'- gGCGCUCAAGAACGCCGAAAGCCGCGUc -3'
miRNA:   3'- -CGCGAGUUCUUGCGGCUUUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 17211 0.74 0.334877
Target:  5'- gGCGUUCuuGAGCGCCGAGuuCCGCu- -3'
miRNA:   3'- -CGCGAGuuCUUGCGGCUUucGGCGca -5'
12336 5' -54.3 NC_003324.1 + 16128 0.68 0.666929
Target:  5'- uGCGC---AGGGCGCuucgguagCGggGGCCGCGc -3'
miRNA:   3'- -CGCGaguUCUUGCG--------GCuuUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 15735 0.7 0.546116
Target:  5'- cGCGUcaUCGAGcGCGCCG-GGGCCGUc- -3'
miRNA:   3'- -CGCG--AGUUCuUGCGGCuUUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 15664 0.66 0.782498
Target:  5'- cGCGCUCGAuGACGC-GAucaaggcGGGCCaGCGa -3'
miRNA:   3'- -CGCGAGUUcUUGCGgCU-------UUCGG-CGCa -5'
12336 5' -54.3 NC_003324.1 + 15364 0.73 0.395446
Target:  5'- uGCGCgCGAGGACGCUGAauacGAGCgcaGCGa -3'
miRNA:   3'- -CGCGaGUUCUUGCGGCU----UUCGg--CGCa -5'
12336 5' -54.3 NC_003324.1 + 14894 0.74 0.35147
Target:  5'- cCGCcCAGGAAgcUGCCGAugccGGCCGCGUu -3'
miRNA:   3'- cGCGaGUUCUU--GCGGCUu---UCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 14653 0.7 0.514128
Target:  5'- cCGCUU----GCGCCGGcAGGCCGCGa -3'
miRNA:   3'- cGCGAGuucuUGCGGCU-UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 14600 0.67 0.731967
Target:  5'- aGCGCcuugUCGcGGACGCCcu--GCCGCGc -3'
miRNA:   3'- -CGCG----AGUuCUUGCGGcuuuCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 14545 0.71 0.503633
Target:  5'- gGCGCUCAAG---GCCGAcguggucaacauGGGUCGCGg -3'
miRNA:   3'- -CGCGAGUUCuugCGGCU------------UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 14468 0.66 0.793369
Target:  5'- cGCGCUCGguugcGGcGCGuuGAuuggcagcAGCCGUGg -3'
miRNA:   3'- -CGCGAGU-----UCuUGCggCUu-------UCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 14092 0.7 0.556925
Target:  5'- aGCGCUCAAGGAaGCgGAGAcCgGCGa -3'
miRNA:   3'- -CGCGAGUUCUUgCGgCUUUcGgCGCa -5'
12336 5' -54.3 NC_003324.1 + 13297 0.69 0.563439
Target:  5'- gGCGUUCAacgaucGGGACGCCGAaaagcuuGaggugcucgacggcAGCCGCGc -3'
miRNA:   3'- -CGCGAGU------UCUUGCGGCU-------U--------------UCGGCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.