miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12336 5' -54.3 NC_003324.1 + 31239 0.67 0.699747
Target:  5'- aGCGC-CA---GCGCCGccGGCCGCa- -3'
miRNA:   3'- -CGCGaGUucuUGCGGCuuUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 31128 0.67 0.688858
Target:  5'- aGCGCgucagCAGGAguugaACGCCGA---CCGCGc -3'
miRNA:   3'- -CGCGa----GUUCU-----UGCGGCUuucGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 29026 0.67 0.710568
Target:  5'- uUGCUCAAGcAGCGCCaGgcGGCaCGCu- -3'
miRNA:   3'- cGCGAGUUC-UUGCGG-CuuUCG-GCGca -5'
12336 5' -54.3 NC_003324.1 + 28689 0.67 0.721312
Target:  5'- cGgGCcaCGAGGGCGacagcgggCGGAAGCCGCGa -3'
miRNA:   3'- -CgCGa-GUUCUUGCg-------GCUUUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 28193 0.67 0.696486
Target:  5'- uGgGCUCGGGcagggcguuaGACGgCGAagucgcggcuucguGAGCCGCGUc -3'
miRNA:   3'- -CgCGAGUUC----------UUGCgGCU--------------UUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 27351 0.69 0.622758
Target:  5'- cGCGC-CAccAACG-CGGAAGCCGUGUu -3'
miRNA:   3'- -CGCGaGUucUUGCgGCUUUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 27202 0.7 0.546116
Target:  5'- cGgGCUCAAGAgcgagagcgaccGCGCUGGuguGCUGCGc -3'
miRNA:   3'- -CgCGAGUUCU------------UGCGGCUuu-CGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 26877 0.71 0.482931
Target:  5'- -gGCUCAAGGgugACGCCGGGcuccauGUCGCGa -3'
miRNA:   3'- cgCGAGUUCU---UGCGGCUUu-----CGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 26407 0.74 0.343101
Target:  5'- aUGCUCGAaccGGCGCUGAaagAAGCCGCGg -3'
miRNA:   3'- cGCGAGUUc--UUGCGGCU---UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 26255 0.67 0.699747
Target:  5'- cCGCagCGAGAcCGCCGAcagaaugaugcAGGCCGCc- -3'
miRNA:   3'- cGCGa-GUUCUuGCGGCU-----------UUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 26203 0.68 0.666929
Target:  5'- aCGgUCGAGAucagguaGCCGAAGGCC-CGUu -3'
miRNA:   3'- cGCgAGUUCUug-----CGGCUUUCGGcGCA- -5'
12336 5' -54.3 NC_003324.1 + 26130 0.69 0.58968
Target:  5'- cGCGCUUgagcuAGAGCGCCGgcAGaCCG-GUg -3'
miRNA:   3'- -CGCGAGu----UCUUGCGGCuuUC-GGCgCA- -5'
12336 5' -54.3 NC_003324.1 + 24428 0.7 0.524711
Target:  5'- gGCGUUCccGAaugacACGUCGAAGGaCCGCGUu -3'
miRNA:   3'- -CGCGAGuuCU-----UGCGGCUUUC-GGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 24353 0.67 0.731967
Target:  5'- cGUGUcauUCGGGAACGCCac-AGCCuGCGa -3'
miRNA:   3'- -CGCG---AGUUCUUGCGGcuuUCGG-CGCa -5'
12336 5' -54.3 NC_003324.1 + 24147 0.67 0.736201
Target:  5'- aGCGCaccggCGAGAAgguaaagcccgccagUGCCGAgaAGGCCGCc- -3'
miRNA:   3'- -CGCGa----GUUCUU---------------GCGGCU--UUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 23987 0.71 0.482931
Target:  5'- cGCGCUCGAc-GCGCUGGuaGGGCgGCGg -3'
miRNA:   3'- -CGCGAGUUcuUGCGGCU--UUCGgCGCa -5'
12336 5' -54.3 NC_003324.1 + 23279 0.68 0.677916
Target:  5'- -gGCUC-AGAugcGCGCCGucauAGCUGCGc -3'
miRNA:   3'- cgCGAGuUCU---UGCGGCuu--UCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 22227 0.68 0.677916
Target:  5'- cGCGCaccuUCGGGAGCggcaacgucuuGCCGAucGCgGCGa -3'
miRNA:   3'- -CGCG----AGUUCUUG-----------CGGCUuuCGgCGCa -5'
12336 5' -54.3 NC_003324.1 + 22122 0.69 0.611711
Target:  5'- aUGCUCAAGGucaugucggACGCgCGcAAGGCUGCGc -3'
miRNA:   3'- cGCGAGUUCU---------UGCG-GC-UUUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 21396 0.7 0.556925
Target:  5'- cGCGCgaaaUCGAGGAuauCGCCGGcgAGGCgGCGa -3'
miRNA:   3'- -CGCG----AGUUCUU---GCGGCU--UUCGgCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.