Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12336 | 5' | -54.3 | NC_003324.1 | + | 33407 | 0.66 | 0.77346 |
Target: 5'- aCGCUUGcgauGAACGCCc-GAGCCGCu- -3' miRNA: 3'- cGCGAGUu---CUUGCGGcuUUCGGCGca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 21199 | 0.71 | 0.461645 |
Target: 5'- cGUGCUCAAccgccuggcuuucGAGCuGCCGAAGGCgacggCGCGUu -3' miRNA: 3'- -CGCGAGUU-------------CUUG-CGGCUUUCG-----GCGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 57276 | 0.72 | 0.452675 |
Target: 5'- uGCGCUCAGaugcucAACGCCGGucguGCCGCc- -3' miRNA: 3'- -CGCGAGUUc-----UUGCGGCUuu--CGGCGca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 15364 | 0.73 | 0.395446 |
Target: 5'- uGCGCgCGAGGACGCUGAauacGAGCgcaGCGa -3' miRNA: 3'- -CGCGaGUUCUUGCGGCU----UUCGg--CGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 11481 | 0.75 | 0.281377 |
Target: 5'- uGCGgUCAAGAGCGCCGucGAGaCUGCa- -3' miRNA: 3'- -CGCgAGUUCUUGCGGCu-UUC-GGCGca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 8332 | 0.7 | 0.556925 |
Target: 5'- gGCGCUCGuuacgguGAcCGUCGGcgggGAGCUGCGUc -3' miRNA: 3'- -CGCGAGUu------CUuGCGGCU----UUCGGCGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 13297 | 0.69 | 0.563439 |
Target: 5'- gGCGUUCAacgaucGGGACGCCGAaaagcuuGaggugcucgacggcAGCCGCGc -3' miRNA: 3'- -CGCGAGU------UCUUGCGGCU-------U--------------UCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 57230 | 0.66 | 0.752962 |
Target: 5'- gGCGCaCAAGAAcuuCGCCaAGGGUCGCa- -3' miRNA: 3'- -CGCGaGUUCUU---GCGGcUUUCGGCGca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 49073 | 0.67 | 0.742521 |
Target: 5'- -gGCUCugcaccGGgGCCGAAAGCgGCGUc -3' miRNA: 3'- cgCGAGuuc---UUgCGGCUUUCGgCGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 45859 | 0.67 | 0.742521 |
Target: 5'- gGCGC---GGGGCGCCuGAugcgAGGCCGUGa -3' miRNA: 3'- -CGCGaguUCUUGCGG-CU----UUCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 55330 | 0.67 | 0.742521 |
Target: 5'- aGCgGCUCAAGGAuCGCUGGAa--CGCGa -3' miRNA: 3'- -CG-CGAGUUCUU-GCGGCUUucgGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 24353 | 0.67 | 0.731967 |
Target: 5'- cGUGUcauUCGGGAACGCCac-AGCCuGCGa -3' miRNA: 3'- -CGCG---AGUUCUUGCGGcuuUCGG-CGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 28193 | 0.67 | 0.696486 |
Target: 5'- uGgGCUCGGGcagggcguuaGACGgCGAagucgcggcuucguGAGCCGCGUc -3' miRNA: 3'- -CgCGAGUUC----------UUGCgGCU--------------UUCGGCGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 31239 | 0.67 | 0.699747 |
Target: 5'- aGCGC-CA---GCGCCGccGGCCGCa- -3' miRNA: 3'- -CGCGaGUucuUGCGGCuuUCGGCGca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 22227 | 0.68 | 0.677916 |
Target: 5'- cGCGCaccuUCGGGAGCggcaacgucuuGCCGAucGCgGCGa -3' miRNA: 3'- -CGCG----AGUUCUUG-----------CGGCUuuCGgCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 23279 | 0.68 | 0.677916 |
Target: 5'- -gGCUC-AGAugcGCGCCGucauAGCUGCGc -3' miRNA: 3'- cgCGAGuUCU---UGCGGCuu--UCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 16128 | 0.68 | 0.666929 |
Target: 5'- uGCGC---AGGGCGCuucgguagCGggGGCCGCGc -3' miRNA: 3'- -CGCGaguUCUUGCG--------GCuuUCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 20991 | 0.68 | 0.655909 |
Target: 5'- -aGCUCAcgucGGAuCGCCGcaaugauGGCCGCGc -3' miRNA: 3'- cgCGAGU----UCUuGCGGCuu-----UCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 44434 | 0.68 | 0.644867 |
Target: 5'- gGCGC-CGAGAcuucgguCGCUGAuGGCCgGCGUu -3' miRNA: 3'- -CGCGaGUUCUu------GCGGCUuUCGG-CGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 44015 | 0.69 | 0.600682 |
Target: 5'- cCGC-CGGGAucAUGCCGAgcGCUGCGa -3' miRNA: 3'- cGCGaGUUCU--UGCGGCUuuCGGCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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