miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12336 5' -54.3 NC_003324.1 + 2074 0.74 0.311077
Target:  5'- aCGgUUGAGAACGUCGAgcgaAAGCCGUGUg -3'
miRNA:   3'- cGCgAGUUCUUGCGGCU----UUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 26407 0.74 0.343101
Target:  5'- aUGCUCGAaccGGCGCUGAaagAAGCCGCGg -3'
miRNA:   3'- cGCGAGUUc--UUGCGGCU---UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 14894 0.74 0.35147
Target:  5'- cCGCcCAGGAAgcUGCCGAugccGGCCGCGUu -3'
miRNA:   3'- cGCGaGUUCUU--GCGGCUu---UCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 17909 0.73 0.395446
Target:  5'- gGCGUUCAAGGGCGacaccCCGAAugcgcGCCGUGa -3'
miRNA:   3'- -CGCGAGUUCUUGC-----GGCUUu----CGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 14653 0.7 0.514128
Target:  5'- cCGCUU----GCGCCGGcAGGCCGCGa -3'
miRNA:   3'- cGCGAGuucuUGCGGCU-UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 24428 0.7 0.524711
Target:  5'- gGCGUUCccGAaugacACGUCGAAGGaCCGCGUu -3'
miRNA:   3'- -CGCGAGuuCU-----UGCGGCUUUC-GGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 5174 0.66 0.783494
Target:  5'- gGCGCagaucgUCGAucGCGCCGcuuaagcuaucAGGCCGCGUu -3'
miRNA:   3'- -CGCG------AGUUcuUGCGGCu----------UUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 27202 0.7 0.546116
Target:  5'- cGgGCUCAAGAgcgagagcgaccGCGCUGGuguGCUGCGc -3'
miRNA:   3'- -CgCGAGUUCU------------UGCGGCUuu-CGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 15735 0.7 0.546116
Target:  5'- cGCGUcaUCGAGcGCGCCG-GGGCCGUc- -3'
miRNA:   3'- -CGCG--AGUUCuUGCGGCuUUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 21396 0.7 0.556925
Target:  5'- cGCGCgaaaUCGAGGAuauCGCCGGcgAGGCgGCGa -3'
miRNA:   3'- -CGCG----AGUUCUU---GCGGCU--UUCGgCGCa -5'
12336 5' -54.3 NC_003324.1 + 32470 0.69 0.567793
Target:  5'- cGCGC-CGAGGugGUgCGAGAGCC-CGa -3'
miRNA:   3'- -CGCGaGUUCUugCG-GCUUUCGGcGCa -5'
12336 5' -54.3 NC_003324.1 + 54967 0.69 0.583096
Target:  5'- uCGCUUgcGGGCGCCGAcauucgcgagcauccGGGCCuGCGg -3'
miRNA:   3'- cGCGAGuuCUUGCGGCU---------------UUCGG-CGCa -5'
12336 5' -54.3 NC_003324.1 + 26130 0.69 0.58968
Target:  5'- cGCGCUUgagcuAGAGCGCCGgcAGaCCG-GUg -3'
miRNA:   3'- -CGCGAGu----UCUUGCGGCuuUC-GGCgCA- -5'
12336 5' -54.3 NC_003324.1 + 5115 0.69 0.58968
Target:  5'- gGUGUcgaUCGAGAucACGCCGu-AGUCGCGg -3'
miRNA:   3'- -CGCG---AGUUCU--UGCGGCuuUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 14468 0.66 0.793369
Target:  5'- cGCGCUCGguugcGGcGCGuuGAuuggcagcAGCCGUGg -3'
miRNA:   3'- -CGCGAGU-----UCuUGCggCUu-------UCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 44015 0.69 0.600682
Target:  5'- cCGC-CGGGAucAUGCCGAgcGCUGCGa -3'
miRNA:   3'- cGCGaGUUCU--UGCGGCUuuCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 1154 0.78 0.200329
Target:  5'- aCGCUCGGGGcgaGCgGGAAGCCGCGa -3'
miRNA:   3'- cGCGAGUUCUug-CGgCUUUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 6578 0.69 0.58968
Target:  5'- aCGCUCAGGA--GCCGAAcuGGCacacaGCGUc -3'
miRNA:   3'- cGCGAGUUCUugCGGCUU--UCGg----CGCA- -5'
12336 5' -54.3 NC_003324.1 + 13297 0.69 0.563439
Target:  5'- gGCGUUCAacgaucGGGACGCCGAaaagcuuGaggugcucgacggcAGCCGCGc -3'
miRNA:   3'- -CGCGAGU------UCUUGCGGCU-------U--------------UCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 8332 0.7 0.556925
Target:  5'- gGCGCUCGuuacgguGAcCGUCGGcgggGAGCUGCGUc -3'
miRNA:   3'- -CGCGAGUu------CUuGCGGCU----UUCGGCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.