miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12336 5' -54.3 NC_003324.1 + 27351 0.69 0.622758
Target:  5'- cGCGC-CAccAACG-CGGAAGCCGUGUu -3'
miRNA:   3'- -CGCGaGUucUUGCgGCUUUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 31128 0.67 0.688858
Target:  5'- aGCGCgucagCAGGAguugaACGCCGA---CCGCGc -3'
miRNA:   3'- -CGCGa----GUUCU-----UGCGGCUuucGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 17283 1.09 0.001391
Target:  5'- gGCGCUCAAGAACGCCGAAAGCCGCGUc -3'
miRNA:   3'- -CGCGAGUUCUUGCGGCUUUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 24428 0.7 0.524711
Target:  5'- gGCGUUCccGAaugacACGUCGAAGGaCCGCGUu -3'
miRNA:   3'- -CGCGAGuuCU-----UGCGGCUUUC-GGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 5115 0.69 0.58968
Target:  5'- gGUGUcgaUCGAGAucACGCCGu-AGUCGCGg -3'
miRNA:   3'- -CGCG---AGUUCU--UGCGGCuuUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 18906 0.67 0.688858
Target:  5'- gGCGUgaUgGAGAcugGCGCCGAccuucGCCGCGc -3'
miRNA:   3'- -CGCG--AgUUCU---UGCGGCUuu---CGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 51765 0.7 0.534306
Target:  5'- gGCGCUCGAcgcGAACGUCGGucacgaucaggguAAGgCGCGa -3'
miRNA:   3'- -CGCGAGUU---CUUGCGGCU-------------UUCgGCGCa -5'
12336 5' -54.3 NC_003324.1 + 26255 0.67 0.699747
Target:  5'- cCGCagCGAGAcCGCCGAcagaaugaugcAGGCCGCc- -3'
miRNA:   3'- cGCGa-GUUCUuGCGGCU-----------UUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 29026 0.67 0.710568
Target:  5'- uUGCUCAAGcAGCGCCaGgcGGCaCGCu- -3'
miRNA:   3'- cGCGAGUUC-UUGCGG-CuuUCG-GCGca -5'
12336 5' -54.3 NC_003324.1 + 26130 0.69 0.58968
Target:  5'- cGCGCUUgagcuAGAGCGCCGgcAGaCCG-GUg -3'
miRNA:   3'- -CGCGAGu----UCUUGCGGCuuUC-GGCgCA- -5'
12336 5' -54.3 NC_003324.1 + 26407 0.74 0.343101
Target:  5'- aUGCUCGAaccGGCGCUGAaagAAGCCGCGg -3'
miRNA:   3'- cGCGAGUUc--UUGCGGCU---UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 42015 0.68 0.633813
Target:  5'- aGCGCaUCGGGAACGCgguaccucCGGAuGCgGCGa -3'
miRNA:   3'- -CGCG-AGUUCUUGCG--------GCUUuCGgCGCa -5'
12336 5' -54.3 NC_003324.1 + 50626 0.67 0.688858
Target:  5'- uGCGCUCGgcgucgagcAGGucaACGCgGGugcuGGCUGCGUg -3'
miRNA:   3'- -CGCGAGU---------UCU---UGCGgCUu---UCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 21396 0.7 0.556925
Target:  5'- cGCGCgaaaUCGAGGAuauCGCCGGcgAGGCgGCGa -3'
miRNA:   3'- -CGCG----AGUUCUU---GCGGCU--UUCGgCGCa -5'
12336 5' -54.3 NC_003324.1 + 14653 0.7 0.514128
Target:  5'- cCGCUU----GCGCCGGcAGGCCGCGa -3'
miRNA:   3'- cGCGAGuucuUGCGGCU-UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 13297 0.69 0.563439
Target:  5'- gGCGUUCAacgaucGGGACGCCGAaaagcuuGaggugcucgacggcAGCCGCGc -3'
miRNA:   3'- -CGCGAGU------UCUUGCGGCU-------U--------------UCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 8332 0.7 0.556925
Target:  5'- gGCGCUCGuuacgguGAcCGUCGGcgggGAGCUGCGUc -3'
miRNA:   3'- -CGCGAGUu------CUuGCGGCU----UUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 48770 0.66 0.757104
Target:  5'- aGCGCUCAAGGuCGCCccuucguauuucuucGAcAAGCCGg-- -3'
miRNA:   3'- -CGCGAGUUCUuGCGG---------------CU-UUCGGCgca -5'
12336 5' -54.3 NC_003324.1 + 49073 0.67 0.742521
Target:  5'- -gGCUCugcaccGGgGCCGAAAGCgGCGUc -3'
miRNA:   3'- cgCGAGuuc---UUgCGGCUUUCGgCGCA- -5'
12336 5' -54.3 NC_003324.1 + 57230 0.66 0.752962
Target:  5'- gGCGCaCAAGAAcuuCGCCaAGGGUCGCa- -3'
miRNA:   3'- -CGCGaGUUCUU---GCGGcUUUCGGCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.