miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12336 5' -54.3 NC_003324.1 + 1154 0.78 0.200329
Target:  5'- aCGCUCGGGGcgaGCgGGAAGCCGCGa -3'
miRNA:   3'- cGCGAGUUCUug-CGgCUUUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 16128 0.68 0.666929
Target:  5'- uGCGC---AGGGCGCuucgguagCGggGGCCGCGc -3'
miRNA:   3'- -CGCGaguUCUUGCG--------GCuuUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 20991 0.68 0.655909
Target:  5'- -aGCUCAcgucGGAuCGCCGcaaugauGGCCGCGc -3'
miRNA:   3'- cgCGAGU----UCUuGCGGCuu-----UCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 44434 0.68 0.644867
Target:  5'- gGCGC-CGAGAcuucgguCGCUGAuGGCCgGCGUu -3'
miRNA:   3'- -CGCGaGUUCUu------GCGGCUuUCGG-CGCA- -5'
12336 5' -54.3 NC_003324.1 + 44015 0.69 0.600682
Target:  5'- cCGC-CGGGAucAUGCCGAgcGCUGCGa -3'
miRNA:   3'- cGCGaGUUCU--UGCGGCUuuCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 6578 0.69 0.58968
Target:  5'- aCGCUCAGGA--GCCGAAcuGGCacacaGCGUc -3'
miRNA:   3'- cGCGAGUUCUugCGGCUU--UCGg----CGCA- -5'
12336 5' -54.3 NC_003324.1 + 13297 0.69 0.563439
Target:  5'- gGCGUUCAacgaucGGGACGCCGAaaagcuuGaggugcucgacggcAGCCGCGc -3'
miRNA:   3'- -CGCGAGU------UCUUGCGGCU-------U--------------UCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 8332 0.7 0.556925
Target:  5'- gGCGCUCGuuacgguGAcCGUCGGcgggGAGCUGCGUc -3'
miRNA:   3'- -CGCGAGUu------CUuGCGGCU----UUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 14092 0.7 0.556925
Target:  5'- aGCGCUCAAGGAaGCgGAGAcCgGCGa -3'
miRNA:   3'- -CGCGAGUUCUUgCGgCUUUcGgCGCa -5'
12336 5' -54.3 NC_003324.1 + 35310 0.7 0.514128
Target:  5'- cGCGC-CGgcGGAuuGCGCCGGcuGCUGCGg -3'
miRNA:   3'- -CGCGaGU--UCU--UGCGGCUuuCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 14545 0.71 0.503633
Target:  5'- gGCGCUCAAG---GCCGAcguggucaacauGGGUCGCGg -3'
miRNA:   3'- -CGCGAGUUCuugCGGCU------------UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 53732 0.71 0.493232
Target:  5'- aGCGCguaCAGGAA--CCGGAGGCCGCu- -3'
miRNA:   3'- -CGCGa--GUUCUUgcGGCUUUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 23987 0.71 0.482931
Target:  5'- cGCGCUCGAc-GCGCUGGuaGGGCgGCGg -3'
miRNA:   3'- -CGCGAGUUcuUGCGGCU--UUCGgCGCa -5'
12336 5' -54.3 NC_003324.1 + 26877 0.71 0.482931
Target:  5'- -gGCUCAAGGgugACGCCGGGcuccauGUCGCGa -3'
miRNA:   3'- cgCGAGUUCU---UGCGGCUUu-----CGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 21199 0.71 0.461645
Target:  5'- cGUGCUCAAccgccuggcuuucGAGCuGCCGAAGGCgacggCGCGUu -3'
miRNA:   3'- -CGCGAGUU-------------CUUG-CGGCUUUCG-----GCGCA- -5'
12336 5' -54.3 NC_003324.1 + 57276 0.72 0.452675
Target:  5'- uGCGCUCAGaugcucAACGCCGGucguGCCGCc- -3'
miRNA:   3'- -CGCGAGUUc-----UUGCGGCUuu--CGGCGca -5'
12336 5' -54.3 NC_003324.1 + 15364 0.73 0.395446
Target:  5'- uGCGCgCGAGGACGCUGAauacGAGCgcaGCGa -3'
miRNA:   3'- -CGCGaGUUCUUGCGGCU----UUCGg--CGCa -5'
12336 5' -54.3 NC_003324.1 + 17211 0.74 0.334877
Target:  5'- gGCGUUCuuGAGCGCCGAGuuCCGCu- -3'
miRNA:   3'- -CGCGAGuuCUUGCGGCUUucGGCGca -5'
12336 5' -54.3 NC_003324.1 + 11481 0.75 0.281377
Target:  5'- uGCGgUCAAGAGCGCCGucGAGaCUGCa- -3'
miRNA:   3'- -CGCgAGUUCUUGCGGCu-UUC-GGCGca -5'
12336 5' -54.3 NC_003324.1 + 43795 0.78 0.189832
Target:  5'- gGUGC-CGGGAACGCCGGcAAGgCGCGUg -3'
miRNA:   3'- -CGCGaGUUCUUGCGGCU-UUCgGCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.