Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12336 | 5' | -54.3 | NC_003324.1 | + | 17283 | 1.09 | 0.001391 |
Target: 5'- gGCGCUCAAGAACGCCGAAAGCCGCGUc -3' miRNA: 3'- -CGCGAGUUCUUGCGGCUUUCGGCGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 43795 | 0.78 | 0.189832 |
Target: 5'- gGUGC-CGGGAACGCCGGcAAGgCGCGUg -3' miRNA: 3'- -CGCGaGUUCUUGCGGCU-UUCgGCGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 53393 | 0.78 | 0.195019 |
Target: 5'- uGCGCUCAAcGGCGaCCGAuaguucuuucucAAGCCGCGa -3' miRNA: 3'- -CGCGAGUUcUUGC-GGCU------------UUCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 1154 | 0.78 | 0.200329 |
Target: 5'- aCGCUCGGGGcgaGCgGGAAGCCGCGa -3' miRNA: 3'- cGCGAGUUCUug-CGgCUUUCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 11481 | 0.75 | 0.281377 |
Target: 5'- uGCGgUCAAGAGCGCCGucGAGaCUGCa- -3' miRNA: 3'- -CGCgAGUUCUUGCGGCu-UUC-GGCGca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 2074 | 0.74 | 0.311077 |
Target: 5'- aCGgUUGAGAACGUCGAgcgaAAGCCGUGUg -3' miRNA: 3'- cGCgAGUUCUUGCGGCU----UUCGGCGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 17211 | 0.74 | 0.334877 |
Target: 5'- gGCGUUCuuGAGCGCCGAGuuCCGCu- -3' miRNA: 3'- -CGCGAGuuCUUGCGGCUUucGGCGca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 26407 | 0.74 | 0.343101 |
Target: 5'- aUGCUCGAaccGGCGCUGAaagAAGCCGCGg -3' miRNA: 3'- cGCGAGUUc--UUGCGGCU---UUCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 14894 | 0.74 | 0.35147 |
Target: 5'- cCGCcCAGGAAgcUGCCGAugccGGCCGCGUu -3' miRNA: 3'- cGCGaGUUCUU--GCGGCUu---UCGGCGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 17909 | 0.73 | 0.395446 |
Target: 5'- gGCGUUCAAGGGCGacaccCCGAAugcgcGCCGUGa -3' miRNA: 3'- -CGCGAGUUCUUGC-----GGCUUu----CGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 15364 | 0.73 | 0.395446 |
Target: 5'- uGCGCgCGAGGACGCUGAauacGAGCgcaGCGa -3' miRNA: 3'- -CGCGaGUUCUUGCGGCU----UUCGg--CGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 57276 | 0.72 | 0.452675 |
Target: 5'- uGCGCUCAGaugcucAACGCCGGucguGCCGCc- -3' miRNA: 3'- -CGCGAGUUc-----UUGCGGCUuu--CGGCGca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 21199 | 0.71 | 0.461645 |
Target: 5'- cGUGCUCAAccgccuggcuuucGAGCuGCCGAAGGCgacggCGCGUu -3' miRNA: 3'- -CGCGAGUU-------------CUUG-CGGCUUUCG-----GCGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 23987 | 0.71 | 0.482931 |
Target: 5'- cGCGCUCGAc-GCGCUGGuaGGGCgGCGg -3' miRNA: 3'- -CGCGAGUUcuUGCGGCU--UUCGgCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 26877 | 0.71 | 0.482931 |
Target: 5'- -gGCUCAAGGgugACGCCGGGcuccauGUCGCGa -3' miRNA: 3'- cgCGAGUUCU---UGCGGCUUu-----CGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 53732 | 0.71 | 0.493232 |
Target: 5'- aGCGCguaCAGGAA--CCGGAGGCCGCu- -3' miRNA: 3'- -CGCGa--GUUCUUgcGGCUUUCGGCGca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 14545 | 0.71 | 0.503633 |
Target: 5'- gGCGCUCAAG---GCCGAcguggucaacauGGGUCGCGg -3' miRNA: 3'- -CGCGAGUUCuugCGGCU------------UUCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 35310 | 0.7 | 0.514128 |
Target: 5'- cGCGC-CGgcGGAuuGCGCCGGcuGCUGCGg -3' miRNA: 3'- -CGCGaGU--UCU--UGCGGCUuuCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 14653 | 0.7 | 0.514128 |
Target: 5'- cCGCUU----GCGCCGGcAGGCCGCGa -3' miRNA: 3'- cGCGAGuucuUGCGGCU-UUCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 24428 | 0.7 | 0.524711 |
Target: 5'- gGCGUUCccGAaugacACGUCGAAGGaCCGCGUu -3' miRNA: 3'- -CGCGAGuuCU-----UGCGGCUUUC-GGCGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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