miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12336 5' -54.3 NC_003324.1 + 17283 1.09 0.001391
Target:  5'- gGCGCUCAAGAACGCCGAAAGCCGCGUc -3'
miRNA:   3'- -CGCGAGUUCUUGCGGCUUUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 43795 0.78 0.189832
Target:  5'- gGUGC-CGGGAACGCCGGcAAGgCGCGUg -3'
miRNA:   3'- -CGCGaGUUCUUGCGGCU-UUCgGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 53393 0.78 0.195019
Target:  5'- uGCGCUCAAcGGCGaCCGAuaguucuuucucAAGCCGCGa -3'
miRNA:   3'- -CGCGAGUUcUUGC-GGCU------------UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 1154 0.78 0.200329
Target:  5'- aCGCUCGGGGcgaGCgGGAAGCCGCGa -3'
miRNA:   3'- cGCGAGUUCUug-CGgCUUUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 11481 0.75 0.281377
Target:  5'- uGCGgUCAAGAGCGCCGucGAGaCUGCa- -3'
miRNA:   3'- -CGCgAGUUCUUGCGGCu-UUC-GGCGca -5'
12336 5' -54.3 NC_003324.1 + 2074 0.74 0.311077
Target:  5'- aCGgUUGAGAACGUCGAgcgaAAGCCGUGUg -3'
miRNA:   3'- cGCgAGUUCUUGCGGCU----UUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 17211 0.74 0.334877
Target:  5'- gGCGUUCuuGAGCGCCGAGuuCCGCu- -3'
miRNA:   3'- -CGCGAGuuCUUGCGGCUUucGGCGca -5'
12336 5' -54.3 NC_003324.1 + 26407 0.74 0.343101
Target:  5'- aUGCUCGAaccGGCGCUGAaagAAGCCGCGg -3'
miRNA:   3'- cGCGAGUUc--UUGCGGCU---UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 14894 0.74 0.35147
Target:  5'- cCGCcCAGGAAgcUGCCGAugccGGCCGCGUu -3'
miRNA:   3'- cGCGaGUUCUU--GCGGCUu---UCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 17909 0.73 0.395446
Target:  5'- gGCGUUCAAGGGCGacaccCCGAAugcgcGCCGUGa -3'
miRNA:   3'- -CGCGAGUUCUUGC-----GGCUUu----CGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 15364 0.73 0.395446
Target:  5'- uGCGCgCGAGGACGCUGAauacGAGCgcaGCGa -3'
miRNA:   3'- -CGCGaGUUCUUGCGGCU----UUCGg--CGCa -5'
12336 5' -54.3 NC_003324.1 + 57276 0.72 0.452675
Target:  5'- uGCGCUCAGaugcucAACGCCGGucguGCCGCc- -3'
miRNA:   3'- -CGCGAGUUc-----UUGCGGCUuu--CGGCGca -5'
12336 5' -54.3 NC_003324.1 + 21199 0.71 0.461645
Target:  5'- cGUGCUCAAccgccuggcuuucGAGCuGCCGAAGGCgacggCGCGUu -3'
miRNA:   3'- -CGCGAGUU-------------CUUG-CGGCUUUCG-----GCGCA- -5'
12336 5' -54.3 NC_003324.1 + 23987 0.71 0.482931
Target:  5'- cGCGCUCGAc-GCGCUGGuaGGGCgGCGg -3'
miRNA:   3'- -CGCGAGUUcuUGCGGCU--UUCGgCGCa -5'
12336 5' -54.3 NC_003324.1 + 26877 0.71 0.482931
Target:  5'- -gGCUCAAGGgugACGCCGGGcuccauGUCGCGa -3'
miRNA:   3'- cgCGAGUUCU---UGCGGCUUu-----CGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 53732 0.71 0.493232
Target:  5'- aGCGCguaCAGGAA--CCGGAGGCCGCu- -3'
miRNA:   3'- -CGCGa--GUUCUUgcGGCUUUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 14545 0.71 0.503633
Target:  5'- gGCGCUCAAG---GCCGAcguggucaacauGGGUCGCGg -3'
miRNA:   3'- -CGCGAGUUCuugCGGCU------------UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 35310 0.7 0.514128
Target:  5'- cGCGC-CGgcGGAuuGCGCCGGcuGCUGCGg -3'
miRNA:   3'- -CGCGaGU--UCU--UGCGGCUuuCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 14653 0.7 0.514128
Target:  5'- cCGCUU----GCGCCGGcAGGCCGCGa -3'
miRNA:   3'- cGCGAGuucuUGCGGCU-UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 24428 0.7 0.524711
Target:  5'- gGCGUUCccGAaugacACGUCGAAGGaCCGCGUu -3'
miRNA:   3'- -CGCGAGuuCU-----UGCGGCUUUC-GGCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.