miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12336 5' -54.3 NC_003324.1 + 1154 0.78 0.200329
Target:  5'- aCGCUCGGGGcgaGCgGGAAGCCGCGa -3'
miRNA:   3'- cGCGAGUUCUug-CGgCUUUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 2074 0.74 0.311077
Target:  5'- aCGgUUGAGAACGUCGAgcgaAAGCCGUGUg -3'
miRNA:   3'- cGCgAGUUCUUGCGGCU----UUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 5115 0.69 0.58968
Target:  5'- gGUGUcgaUCGAGAucACGCCGu-AGUCGCGg -3'
miRNA:   3'- -CGCG---AGUUCU--UGCGGCuuUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 5174 0.66 0.783494
Target:  5'- gGCGCagaucgUCGAucGCGCCGcuuaagcuaucAGGCCGCGUu -3'
miRNA:   3'- -CGCG------AGUUcuUGCGGCu----------UUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 6578 0.69 0.58968
Target:  5'- aCGCUCAGGA--GCCGAAcuGGCacacaGCGUc -3'
miRNA:   3'- cGCGAGUUCUugCGGCUU--UCGg----CGCA- -5'
12336 5' -54.3 NC_003324.1 + 8332 0.7 0.556925
Target:  5'- gGCGCUCGuuacgguGAcCGUCGGcgggGAGCUGCGUc -3'
miRNA:   3'- -CGCGAGUu------CUuGCGGCU----UUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 11481 0.75 0.281377
Target:  5'- uGCGgUCAAGAGCGCCGucGAGaCUGCa- -3'
miRNA:   3'- -CGCgAGUUCUUGCGGCu-UUC-GGCGca -5'
12336 5' -54.3 NC_003324.1 + 12741 0.66 0.763279
Target:  5'- uGCGUUCGccAG-ACGCCGAAAgGuuGuCGUa -3'
miRNA:   3'- -CGCGAGU--UCuUGCGGCUUU-CggC-GCA- -5'
12336 5' -54.3 NC_003324.1 + 13297 0.69 0.563439
Target:  5'- gGCGUUCAacgaucGGGACGCCGAaaagcuuGaggugcucgacggcAGCCGCGc -3'
miRNA:   3'- -CGCGAGU------UCUUGCGGCU-------U--------------UCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 14092 0.7 0.556925
Target:  5'- aGCGCUCAAGGAaGCgGAGAcCgGCGa -3'
miRNA:   3'- -CGCGAGUUCUUgCGgCUUUcGgCGCa -5'
12336 5' -54.3 NC_003324.1 + 14468 0.66 0.793369
Target:  5'- cGCGCUCGguugcGGcGCGuuGAuuggcagcAGCCGUGg -3'
miRNA:   3'- -CGCGAGU-----UCuUGCggCUu-------UCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 14545 0.71 0.503633
Target:  5'- gGCGCUCAAG---GCCGAcguggucaacauGGGUCGCGg -3'
miRNA:   3'- -CGCGAGUUCuugCGGCU------------UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 14600 0.67 0.731967
Target:  5'- aGCGCcuugUCGcGGACGCCcu--GCCGCGc -3'
miRNA:   3'- -CGCG----AGUuCUUGCGGcuuuCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 14653 0.7 0.514128
Target:  5'- cCGCUU----GCGCCGGcAGGCCGCGa -3'
miRNA:   3'- cGCGAGuucuUGCGGCU-UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 14894 0.74 0.35147
Target:  5'- cCGCcCAGGAAgcUGCCGAugccGGCCGCGUu -3'
miRNA:   3'- cGCGaGUUCUU--GCGGCUu---UCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 15364 0.73 0.395446
Target:  5'- uGCGCgCGAGGACGCUGAauacGAGCgcaGCGa -3'
miRNA:   3'- -CGCGaGUUCUUGCGGCU----UUCGg--CGCa -5'
12336 5' -54.3 NC_003324.1 + 15664 0.66 0.782498
Target:  5'- cGCGCUCGAuGACGC-GAucaaggcGGGCCaGCGa -3'
miRNA:   3'- -CGCGAGUUcUUGCGgCU-------UUCGG-CGCa -5'
12336 5' -54.3 NC_003324.1 + 15735 0.7 0.546116
Target:  5'- cGCGUcaUCGAGcGCGCCG-GGGCCGUc- -3'
miRNA:   3'- -CGCG--AGUUCuUGCGGCuUUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 16128 0.68 0.666929
Target:  5'- uGCGC---AGGGCGCuucgguagCGggGGCCGCGc -3'
miRNA:   3'- -CGCGaguUCUUGCG--------GCuuUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 17211 0.74 0.334877
Target:  5'- gGCGUUCuuGAGCGCCGAGuuCCGCu- -3'
miRNA:   3'- -CGCGAGuuCUUGCGGCUUucGGCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.