Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12336 | 5' | -54.3 | NC_003324.1 | + | 33407 | 0.66 | 0.77346 |
Target: 5'- aCGCUUGcgauGAACGCCc-GAGCCGCu- -3' miRNA: 3'- cGCGAGUu---CUUGCGGcuUUCGGCGca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 18239 | 0.66 | 0.793369 |
Target: 5'- gGCGgUCAGGuugccauCGaCGAcaGAGCCGCGa -3' miRNA: 3'- -CGCgAGUUCuu-----GCgGCU--UUCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 5174 | 0.66 | 0.783494 |
Target: 5'- gGCGCagaucgUCGAucGCGCCGcuuaagcuaucAGGCCGCGUu -3' miRNA: 3'- -CGCG------AGUUcuUGCGGCu----------UUCGGCGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 48770 | 0.66 | 0.757104 |
Target: 5'- aGCGCUCAAGGuCGCCccuucguauuucuucGAcAAGCCGg-- -3' miRNA: 3'- -CGCGAGUUCUuGCGG---------------CU-UUCGGCgca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 57230 | 0.66 | 0.752962 |
Target: 5'- gGCGCaCAAGAAcuuCGCCaAGGGUCGCa- -3' miRNA: 3'- -CGCGaGUUCUU---GCGGcUUUCGGCGca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 15664 | 0.66 | 0.782498 |
Target: 5'- cGCGCUCGAuGACGC-GAucaaggcGGGCCaGCGa -3' miRNA: 3'- -CGCGAGUUcUUGCGgCU-------UUCGG-CGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 12741 | 0.66 | 0.763279 |
Target: 5'- uGCGUUCGccAG-ACGCCGAAAgGuuGuCGUa -3' miRNA: 3'- -CGCGAGU--UCuUGCGGCUUU-CggC-GCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 47794 | 0.66 | 0.763279 |
Target: 5'- uGCGguuCUCAAGcagcauguCGUCGAggAGGCCGCGa -3' miRNA: 3'- -CGC---GAGUUCuu------GCGGCU--UUCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 14468 | 0.66 | 0.793369 |
Target: 5'- cGCGCUCGguugcGGcGCGuuGAuuggcagcAGCCGUGg -3' miRNA: 3'- -CGCGAGU-----UCuUGCggCUu-------UCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 24147 | 0.67 | 0.736201 |
Target: 5'- aGCGCaccggCGAGAAgguaaagcccgccagUGCCGAgaAGGCCGCc- -3' miRNA: 3'- -CGCGa----GUUCUU---------------GCGGCU--UUCGGCGca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 51661 | 0.67 | 0.721312 |
Target: 5'- uUGCUCGGGAAUaCCGAAGGCgccuuacccuUGCGa -3' miRNA: 3'- cGCGAGUUCUUGcGGCUUUCG----------GCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 28689 | 0.67 | 0.721312 |
Target: 5'- cGgGCcaCGAGGGCGacagcgggCGGAAGCCGCGa -3' miRNA: 3'- -CgCGa-GUUCUUGCg-------GCUUUCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 29026 | 0.67 | 0.710568 |
Target: 5'- uUGCUCAAGcAGCGCCaGgcGGCaCGCu- -3' miRNA: 3'- cGCGAGUUC-UUGCGG-CuuUCG-GCGca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 14600 | 0.67 | 0.731967 |
Target: 5'- aGCGCcuugUCGcGGACGCCcu--GCCGCGc -3' miRNA: 3'- -CGCG----AGUuCUUGCGGcuuuCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 49073 | 0.67 | 0.742521 |
Target: 5'- -gGCUCugcaccGGgGCCGAAAGCgGCGUc -3' miRNA: 3'- cgCGAGuuc---UUgCGGCUUUCGgCGCA- -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 45859 | 0.67 | 0.742521 |
Target: 5'- gGCGC---GGGGCGCCuGAugcgAGGCCGUGa -3' miRNA: 3'- -CGCGaguUCUUGCGG-CU----UUCGGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 55330 | 0.67 | 0.742521 |
Target: 5'- aGCgGCUCAAGGAuCGCUGGAa--CGCGa -3' miRNA: 3'- -CG-CGAGUUCUU-GCGGCUUucgGCGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 24353 | 0.67 | 0.731967 |
Target: 5'- cGUGUcauUCGGGAACGCCac-AGCCuGCGa -3' miRNA: 3'- -CGCG---AGUUCUUGCGGcuuUCGG-CGCa -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 31239 | 0.67 | 0.699747 |
Target: 5'- aGCGC-CA---GCGCCGccGGCCGCa- -3' miRNA: 3'- -CGCGaGUucuUGCGGCuuUCGGCGca -5' |
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12336 | 5' | -54.3 | NC_003324.1 | + | 28193 | 0.67 | 0.696486 |
Target: 5'- uGgGCUCGGGcagggcguuaGACGgCGAagucgcggcuucguGAGCCGCGUc -3' miRNA: 3'- -CgCGAGUUC----------UUGCgGCU--------------UUCGGCGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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