miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12336 5' -54.3 NC_003324.1 + 47794 0.66 0.763279
Target:  5'- uGCGguuCUCAAGcagcauguCGUCGAggAGGCCGCGa -3'
miRNA:   3'- -CGC---GAGUUCuu------GCGGCU--UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 12741 0.66 0.763279
Target:  5'- uGCGUUCGccAG-ACGCCGAAAgGuuGuCGUa -3'
miRNA:   3'- -CGCGAGU--UCuUGCGGCUUU-CggC-GCA- -5'
12336 5' -54.3 NC_003324.1 + 15664 0.66 0.782498
Target:  5'- cGCGCUCGAuGACGC-GAucaaggcGGGCCaGCGa -3'
miRNA:   3'- -CGCGAGUUcUUGCGgCU-------UUCGG-CGCa -5'
12336 5' -54.3 NC_003324.1 + 57230 0.66 0.752962
Target:  5'- gGCGCaCAAGAAcuuCGCCaAGGGUCGCa- -3'
miRNA:   3'- -CGCGaGUUCUU---GCGGcUUUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 48770 0.66 0.757104
Target:  5'- aGCGCUCAAGGuCGCCccuucguauuucuucGAcAAGCCGg-- -3'
miRNA:   3'- -CGCGAGUUCUuGCGG---------------CU-UUCGGCgca -5'
12336 5' -54.3 NC_003324.1 + 33407 0.66 0.77346
Target:  5'- aCGCUUGcgauGAACGCCc-GAGCCGCu- -3'
miRNA:   3'- cGCGAGUu---CUUGCGGcuUUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 18239 0.66 0.793369
Target:  5'- gGCGgUCAGGuugccauCGaCGAcaGAGCCGCGa -3'
miRNA:   3'- -CGCgAGUUCuu-----GCgGCU--UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 14468 0.66 0.793369
Target:  5'- cGCGCUCGguugcGGcGCGuuGAuuggcagcAGCCGUGg -3'
miRNA:   3'- -CGCGAGU-----UCuUGCggCUu-------UCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 5174 0.66 0.783494
Target:  5'- gGCGCagaucgUCGAucGCGCCGcuuaagcuaucAGGCCGCGUu -3'
miRNA:   3'- -CGCG------AGUUcuUGCGGCu----------UUCGGCGCA- -5'
12336 5' -54.3 NC_003324.1 + 14600 0.67 0.731967
Target:  5'- aGCGCcuugUCGcGGACGCCcu--GCCGCGc -3'
miRNA:   3'- -CGCG----AGUuCUUGCGGcuuuCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 29026 0.67 0.710568
Target:  5'- uUGCUCAAGcAGCGCCaGgcGGCaCGCu- -3'
miRNA:   3'- cGCGAGUUC-UUGCGG-CuuUCG-GCGca -5'
12336 5' -54.3 NC_003324.1 + 28689 0.67 0.721312
Target:  5'- cGgGCcaCGAGGGCGacagcgggCGGAAGCCGCGa -3'
miRNA:   3'- -CgCGa-GUUCUUGCg-------GCUUUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 51661 0.67 0.721312
Target:  5'- uUGCUCGGGAAUaCCGAAGGCgccuuacccuUGCGa -3'
miRNA:   3'- cGCGAGUUCUUGcGGCUUUCG----------GCGCa -5'
12336 5' -54.3 NC_003324.1 + 24147 0.67 0.736201
Target:  5'- aGCGCaccggCGAGAAgguaaagcccgccagUGCCGAgaAGGCCGCc- -3'
miRNA:   3'- -CGCGa----GUUCUU---------------GCGGCU--UUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 49073 0.67 0.742521
Target:  5'- -gGCUCugcaccGGgGCCGAAAGCgGCGUc -3'
miRNA:   3'- cgCGAGuuc---UUgCGGCUUUCGgCGCA- -5'
12336 5' -54.3 NC_003324.1 + 45859 0.67 0.742521
Target:  5'- gGCGC---GGGGCGCCuGAugcgAGGCCGUGa -3'
miRNA:   3'- -CGCGaguUCUUGCGG-CU----UUCGGCGCa -5'
12336 5' -54.3 NC_003324.1 + 55330 0.67 0.742521
Target:  5'- aGCgGCUCAAGGAuCGCUGGAa--CGCGa -3'
miRNA:   3'- -CG-CGAGUUCUU-GCGGCUUucgGCGCa -5'
12336 5' -54.3 NC_003324.1 + 24353 0.67 0.731967
Target:  5'- cGUGUcauUCGGGAACGCCac-AGCCuGCGa -3'
miRNA:   3'- -CGCG---AGUUCUUGCGGcuuUCGG-CGCa -5'
12336 5' -54.3 NC_003324.1 + 31239 0.67 0.699747
Target:  5'- aGCGC-CA---GCGCCGccGGCCGCa- -3'
miRNA:   3'- -CGCGaGUucuUGCGGCuuUCGGCGca -5'
12336 5' -54.3 NC_003324.1 + 28193 0.67 0.696486
Target:  5'- uGgGCUCGGGcagggcguuaGACGgCGAagucgcggcuucguGAGCCGCGUc -3'
miRNA:   3'- -CgCGAGUUC----------UUGCgGCU--------------UUCGGCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.