miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12337 5' -61.5 NC_003324.1 + 45583 0.66 0.431945
Target:  5'- cGGGGUuuUACCUgCGGauGUGCGCGCCuGUa -3'
miRNA:   3'- -UCCCGcuGUGGG-GCU--UACGCGCGG-CA- -5'
12337 5' -61.5 NC_003324.1 + 46823 0.66 0.422797
Target:  5'- cGGGGC-ACACCUCG---GCGCcCCGUg -3'
miRNA:   3'- -UCCCGcUGUGGGGCuuaCGCGcGGCA- -5'
12337 5' -61.5 NC_003324.1 + 42531 0.66 0.420075
Target:  5'- uGGGaCGACACCgCCGAuucggugacggGUGCucgcuuccugucugGCGCUGg -3'
miRNA:   3'- uCCC-GCUGUGG-GGCU-----------UACG--------------CGCGGCa -5'
12337 5' -61.5 NC_003324.1 + 39862 0.66 0.412869
Target:  5'- gAGGGCGagguGCACCgugCCGAgaucaucgagcacGUGC-CGCCGg -3'
miRNA:   3'- -UCCCGC----UGUGG---GGCU-------------UACGcGCGGCa -5'
12337 5' -61.5 NC_003324.1 + 8174 0.66 0.411974
Target:  5'- cAGGGCcagucccugcucACugCCCGGcgGCGCGCg-- -3'
miRNA:   3'- -UCCCGc-----------UGugGGGCUuaCGCGCGgca -5'
12337 5' -61.5 NC_003324.1 + 19125 0.66 0.404854
Target:  5'- uGGGCuGCAaaggCUCGAAUGaCGCGCCu- -3'
miRNA:   3'- uCCCGcUGUg---GGGCUUAC-GCGCGGca -5'
12337 5' -61.5 NC_003324.1 + 45982 0.66 0.396065
Target:  5'- aAGcGGCGGCGCCgaaUCGAGgaGCGUGCCc- -3'
miRNA:   3'- -UC-CCGCUGUGG---GGCUUa-CGCGCGGca -5'
12337 5' -61.5 NC_003324.1 + 31733 0.66 0.387399
Target:  5'- -cGGCGGCAacuuCUCCG---GCGCGCCGa -3'
miRNA:   3'- ucCCGCUGU----GGGGCuuaCGCGCGGCa -5'
12337 5' -61.5 NC_003324.1 + 14900 0.66 0.37886
Target:  5'- gAGGGCGACGCgCUCGAc-GCGgucaacaacaUGCCGg -3'
miRNA:   3'- -UCCCGCUGUG-GGGCUuaCGC----------GCGGCa -5'
12337 5' -61.5 NC_003324.1 + 30123 0.66 0.37886
Target:  5'- aAGGGuCGACGCgCUGGAUaGCuGCGuuGUc -3'
miRNA:   3'- -UCCC-GCUGUGgGGCUUA-CG-CGCggCA- -5'
12337 5' -61.5 NC_003324.1 + 37083 0.66 0.37886
Target:  5'- gAGGGCGA-ACCgCUuuAUGCGCGCUa- -3'
miRNA:   3'- -UCCCGCUgUGG-GGcuUACGCGCGGca -5'
12337 5' -61.5 NC_003324.1 + 26654 0.67 0.359703
Target:  5'- gAGGGUGACACCugccugcagaauuuCCGGAucgaUGC-CGCUGUu -3'
miRNA:   3'- -UCCCGCUGUGG--------------GGCUU----ACGcGCGGCA- -5'
12337 5' -61.5 NC_003324.1 + 48975 0.67 0.354009
Target:  5'- cGGGUGGCGgagUCCUGGAUGCGgGCg-- -3'
miRNA:   3'- uCCCGCUGU---GGGGCUUACGCgCGgca -5'
12337 5' -61.5 NC_003324.1 + 50070 0.67 0.353201
Target:  5'- uGGGCGGCgaucauuGCCCCcaucaggGCaGCGCCGa -3'
miRNA:   3'- uCCCGCUG-------UGGGGcuua---CG-CGCGGCa -5'
12337 5' -61.5 NC_003324.1 + 7281 0.67 0.330331
Target:  5'- cGGGGUgucaaaggGACGCCaUCGAGcucgGCGCGCUGg -3'
miRNA:   3'- -UCCCG--------CUGUGG-GGCUUa---CGCGCGGCa -5'
12337 5' -61.5 NC_003324.1 + 17693 0.67 0.330331
Target:  5'- -cGGCGGCAUCgUGcucaAcgGCGCGCCGg -3'
miRNA:   3'- ucCCGCUGUGGgGC----UuaCGCGCGGCa -5'
12337 5' -61.5 NC_003324.1 + 56549 0.68 0.315206
Target:  5'- cGGGCGAaguuGCCCgCGAcccAUGC-CGCCGc -3'
miRNA:   3'- uCCCGCUg---UGGG-GCU---UACGcGCGGCa -5'
12337 5' -61.5 NC_003324.1 + 42284 0.68 0.315206
Target:  5'- cGGGuCGGCaACgCUGAGUGCGcCGCCu- -3'
miRNA:   3'- uCCC-GCUG-UGgGGCUUACGC-GCGGca -5'
12337 5' -61.5 NC_003324.1 + 32898 0.68 0.315206
Target:  5'- cGaGGCGGCugCCCGcca-UGCGCCGa -3'
miRNA:   3'- uC-CCGCUGugGGGCuuacGCGCGGCa -5'
12337 5' -61.5 NC_003324.1 + 15649 0.68 0.30061
Target:  5'- -uGGCGACgGCCCCG---GCGCGCuCGa -3'
miRNA:   3'- ucCCGCUG-UGGGGCuuaCGCGCG-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.