miRNA display CGI


Results 21 - 25 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12337 5' -61.5 NC_003324.1 + 14495 0.7 0.241386
Target:  5'- cGGGCGugAUCCCcaucGAGgcguuUGCGCGCuCGg -3'
miRNA:   3'- uCCCGCugUGGGG----CUU-----ACGCGCG-GCa -5'
12337 5' -61.5 NC_003324.1 + 34152 0.71 0.197211
Target:  5'- cAGGGCGGaGCCgCUGGcauUGgGCGCCGUg -3'
miRNA:   3'- -UCCCGCUgUGG-GGCUu--ACgCGCGGCA- -5'
12337 5' -61.5 NC_003324.1 + 7436 0.71 0.187328
Target:  5'- aAGGGUGcuGCugCCCGAGUGCuGCuGCUGc -3'
miRNA:   3'- -UCCCGC--UGugGGGCUUACG-CG-CGGCa -5'
12337 5' -61.5 NC_003324.1 + 30456 0.72 0.168864
Target:  5'- gAGGGCGGCAUggCCGAggGCGaCGCCa- -3'
miRNA:   3'- -UCCCGCUGUGg-GGCUuaCGC-GCGGca -5'
12337 5' -61.5 NC_003324.1 + 17902 1.07 0.000379
Target:  5'- aAGGGCGACACCCCGAAUGCGCGCCGUg -3'
miRNA:   3'- -UCCCGCUGUGGGGCUUACGCGCGGCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.