Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 18383 | 1.1 | 0.000485 |
Target: 5'- uCUCACCAAGGCCGGGGCAGCGAUUGCc -3' miRNA: 3'- -GAGUGGUUCCGGCCCCGUCGCUAACG- -5' |
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12338 | 5' | -57.6 | NC_003324.1 | + | 25527 | 0.77 | 0.117111 |
Target: 5'- gCUCGCCAAgugggucGGCUGGGGCGGCc--UGCg -3' miRNA: 3'- -GAGUGGUU-------CCGGCCCCGUCGcuaACG- -5' |
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12338 | 5' | -57.6 | NC_003324.1 | + | 38343 | 0.73 | 0.248396 |
Target: 5'- aUCACgAGGGCacCGGGGCGGCGcugGUc -3' miRNA: 3'- gAGUGgUUCCG--GCCCCGUCGCuaaCG- -5' |
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12338 | 5' | -57.6 | NC_003324.1 | + | 44895 | 0.72 | 0.268012 |
Target: 5'- -aCGCCGGGGCgCGGGGgCuG-GAUUGCu -3' miRNA: 3'- gaGUGGUUCCG-GCCCC-GuCgCUAACG- -5' |
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12338 | 5' | -57.6 | NC_003324.1 | + | 11762 | 0.72 | 0.28886 |
Target: 5'- uUCugUGAGGCCGuGGCAaUGGUUGCg -3' miRNA: 3'- gAGugGUUCCGGCcCCGUcGCUAACG- -5' |
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12338 | 5' | -57.6 | NC_003324.1 | + | 13177 | 0.71 | 0.296087 |
Target: 5'- gUCAgCGAGGCUGcgucGGCGGCGGUcgGCg -3' miRNA: 3'- gAGUgGUUCCGGCc---CCGUCGCUAa-CG- -5' |
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12338 | 5' | -57.6 | NC_003324.1 | + | 9552 | 0.69 | 0.393701 |
Target: 5'- gUCAgCCGgaguGGGuCUGGGGUGGCGAUgccGCa -3' miRNA: 3'- gAGU-GGU----UCC-GGCCCCGUCGCUAa--CG- -5' |
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12338 | 5' | -57.6 | NC_003324.1 | + | 48817 | 0.69 | 0.402724 |
Target: 5'- -cCACCGAGGCCaaugGGGGCGaCGAggUGa -3' miRNA: 3'- gaGUGGUUCCGG----CCCCGUcGCUa-ACg -5' |
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12338 | 5' | -57.6 | NC_003324.1 | + | 50771 | 0.69 | 0.409118 |
Target: 5'- -cCGCCGAGGCgGGGGUcaccgucgaagauuGGCGcUUcGCa -3' miRNA: 3'- gaGUGGUUCCGgCCCCG--------------UCGCuAA-CG- -5' |
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12338 | 5' | -57.6 | NC_003324.1 | + | 5952 | 0.69 | 0.430564 |
Target: 5'- aUCcCCAAGGCCGGGuGCGGUu----- -3' miRNA: 3'- gAGuGGUUCCGGCCC-CGUCGcuaacg -5' |
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12338 | 5' | -57.6 | NC_003324.1 | + | 50937 | 0.68 | 0.449738 |
Target: 5'- cCUCGCCAugcugucGCUGGGcgaaccgccuGCAGCGAUguggGCg -3' miRNA: 3'- -GAGUGGUuc-----CGGCCC----------CGUCGCUAa---CG- -5' |
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12338 | 5' | -57.6 | NC_003324.1 | + | 34490 | 0.68 | 0.4595 |
Target: 5'- aUCACCGAuGCCGaggacGGCGGCGAgucGCc -3' miRNA: 3'- gAGUGGUUcCGGCc----CCGUCGCUaa-CG- -5' |
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12338 | 5' | -57.6 | NC_003324.1 | + | 32556 | 0.68 | 0.4595 |
Target: 5'- aUCGCCGAGGCUGc--CGGCGAagGCg -3' miRNA: 3'- gAGUGGUUCCGGCcccGUCGCUaaCG- -5' |
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12338 | 5' | -57.6 | NC_003324.1 | + | 1517 | 0.68 | 0.469374 |
Target: 5'- -cCAgCGAGGauCCGGcGGCAGUGG-UGCg -3' miRNA: 3'- gaGUgGUUCC--GGCC-CCGUCGCUaACG- -5' |
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12338 | 5' | -57.6 | NC_003324.1 | + | 57396 | 0.68 | 0.469374 |
Target: 5'- cCUCACUgcuggAGGGCuCGGcGGaGGCGAggGCg -3' miRNA: 3'- -GAGUGG-----UUCCG-GCC-CCgUCGCUaaCG- -5' |
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12338 | 5' | -57.6 | NC_003324.1 | + | 1146 | 0.68 | 0.479355 |
Target: 5'- uCUCGCUGAcGCuCGGGGCgAGCGGgaaGCc -3' miRNA: 3'- -GAGUGGUUcCG-GCCCCG-UCGCUaa-CG- -5' |
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12338 | 5' | -57.6 | NC_003324.1 | + | 39816 | 0.68 | 0.479355 |
Target: 5'- -aCACCAAGGCCGccauGUGGUGGcUGCa -3' miRNA: 3'- gaGUGGUUCCGGCcc--CGUCGCUaACG- -5' |
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12338 | 5' | -57.6 | NC_003324.1 | + | 40258 | 0.68 | 0.489438 |
Target: 5'- -cCGCCuugcgugcGGuCCGGGGCuuGGCGggUGCc -3' miRNA: 3'- gaGUGGuu------CC-GGCCCCG--UCGCuaACG- -5' |
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12338 | 5' | -57.6 | NC_003324.1 | + | 53817 | 0.68 | 0.489438 |
Target: 5'- -gCACCAAGGUCucgccGGGCuGCGAcaacUGCu -3' miRNA: 3'- gaGUGGUUCCGGc----CCCGuCGCUa---ACG- -5' |
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12338 | 5' | -57.6 | NC_003324.1 | + | 32177 | 0.67 | 0.49962 |
Target: 5'- cCUCACCGGcgacGaGCCGaGGcGCAGCGAg-GCc -3' miRNA: 3'- -GAGUGGUU----C-CGGC-CC-CGUCGCUaaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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