miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12338 5' -57.6 NC_003324.1 + 18383 1.1 0.000485
Target:  5'- uCUCACCAAGGCCGGGGCAGCGAUUGCc -3'
miRNA:   3'- -GAGUGGUUCCGGCCCCGUCGCUAACG- -5'
12338 5' -57.6 NC_003324.1 + 25527 0.77 0.117111
Target:  5'- gCUCGCCAAgugggucGGCUGGGGCGGCc--UGCg -3'
miRNA:   3'- -GAGUGGUU-------CCGGCCCCGUCGcuaACG- -5'
12338 5' -57.6 NC_003324.1 + 38343 0.73 0.248396
Target:  5'- aUCACgAGGGCacCGGGGCGGCGcugGUc -3'
miRNA:   3'- gAGUGgUUCCG--GCCCCGUCGCuaaCG- -5'
12338 5' -57.6 NC_003324.1 + 44895 0.72 0.268012
Target:  5'- -aCGCCGGGGCgCGGGGgCuG-GAUUGCu -3'
miRNA:   3'- gaGUGGUUCCG-GCCCC-GuCgCUAACG- -5'
12338 5' -57.6 NC_003324.1 + 11762 0.72 0.28886
Target:  5'- uUCugUGAGGCCGuGGCAaUGGUUGCg -3'
miRNA:   3'- gAGugGUUCCGGCcCCGUcGCUAACG- -5'
12338 5' -57.6 NC_003324.1 + 13177 0.71 0.296087
Target:  5'- gUCAgCGAGGCUGcgucGGCGGCGGUcgGCg -3'
miRNA:   3'- gAGUgGUUCCGGCc---CCGUCGCUAa-CG- -5'
12338 5' -57.6 NC_003324.1 + 9552 0.69 0.393701
Target:  5'- gUCAgCCGgaguGGGuCUGGGGUGGCGAUgccGCa -3'
miRNA:   3'- gAGU-GGU----UCC-GGCCCCGUCGCUAa--CG- -5'
12338 5' -57.6 NC_003324.1 + 48817 0.69 0.402724
Target:  5'- -cCACCGAGGCCaaugGGGGCGaCGAggUGa -3'
miRNA:   3'- gaGUGGUUCCGG----CCCCGUcGCUa-ACg -5'
12338 5' -57.6 NC_003324.1 + 50771 0.69 0.409118
Target:  5'- -cCGCCGAGGCgGGGGUcaccgucgaagauuGGCGcUUcGCa -3'
miRNA:   3'- gaGUGGUUCCGgCCCCG--------------UCGCuAA-CG- -5'
12338 5' -57.6 NC_003324.1 + 5952 0.69 0.430564
Target:  5'- aUCcCCAAGGCCGGGuGCGGUu----- -3'
miRNA:   3'- gAGuGGUUCCGGCCC-CGUCGcuaacg -5'
12338 5' -57.6 NC_003324.1 + 50937 0.68 0.449738
Target:  5'- cCUCGCCAugcugucGCUGGGcgaaccgccuGCAGCGAUguggGCg -3'
miRNA:   3'- -GAGUGGUuc-----CGGCCC----------CGUCGCUAa---CG- -5'
12338 5' -57.6 NC_003324.1 + 34490 0.68 0.4595
Target:  5'- aUCACCGAuGCCGaggacGGCGGCGAgucGCc -3'
miRNA:   3'- gAGUGGUUcCGGCc----CCGUCGCUaa-CG- -5'
12338 5' -57.6 NC_003324.1 + 32556 0.68 0.4595
Target:  5'- aUCGCCGAGGCUGc--CGGCGAagGCg -3'
miRNA:   3'- gAGUGGUUCCGGCcccGUCGCUaaCG- -5'
12338 5' -57.6 NC_003324.1 + 1517 0.68 0.469374
Target:  5'- -cCAgCGAGGauCCGGcGGCAGUGG-UGCg -3'
miRNA:   3'- gaGUgGUUCC--GGCC-CCGUCGCUaACG- -5'
12338 5' -57.6 NC_003324.1 + 57396 0.68 0.469374
Target:  5'- cCUCACUgcuggAGGGCuCGGcGGaGGCGAggGCg -3'
miRNA:   3'- -GAGUGG-----UUCCG-GCC-CCgUCGCUaaCG- -5'
12338 5' -57.6 NC_003324.1 + 1146 0.68 0.479355
Target:  5'- uCUCGCUGAcGCuCGGGGCgAGCGGgaaGCc -3'
miRNA:   3'- -GAGUGGUUcCG-GCCCCG-UCGCUaa-CG- -5'
12338 5' -57.6 NC_003324.1 + 39816 0.68 0.479355
Target:  5'- -aCACCAAGGCCGccauGUGGUGGcUGCa -3'
miRNA:   3'- gaGUGGUUCCGGCcc--CGUCGCUaACG- -5'
12338 5' -57.6 NC_003324.1 + 40258 0.68 0.489438
Target:  5'- -cCGCCuugcgugcGGuCCGGGGCuuGGCGggUGCc -3'
miRNA:   3'- gaGUGGuu------CC-GGCCCCG--UCGCuaACG- -5'
12338 5' -57.6 NC_003324.1 + 53817 0.68 0.489438
Target:  5'- -gCACCAAGGUCucgccGGGCuGCGAcaacUGCu -3'
miRNA:   3'- gaGUGGUUCCGGc----CCCGuCGCUa---ACG- -5'
12338 5' -57.6 NC_003324.1 + 32177 0.67 0.49962
Target:  5'- cCUCACCGGcgacGaGCCGaGGcGCAGCGAg-GCc -3'
miRNA:   3'- -GAGUGGUU----C-CGGC-CC-CGUCGCUaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.