miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12338 5' -57.6 NC_003324.1 + 38343 0.73 0.248396
Target:  5'- aUCACgAGGGCacCGGGGCGGCGcugGUc -3'
miRNA:   3'- gAGUGgUUCCG--GCCCCGUCGCuaaCG- -5'
12338 5' -57.6 NC_003324.1 + 18030 0.66 0.594702
Target:  5'- -gCGCCAcGGGCCaugcgauaGGCGGCGAgUGCc -3'
miRNA:   3'- gaGUGGU-UCCGGcc------CCGUCGCUaACG- -5'
12338 5' -57.6 NC_003324.1 + 15472 0.66 0.594702
Target:  5'- --gGCCAAGGCCGaGGaUAGCGAc--- -3'
miRNA:   3'- gagUGGUUCCGGC-CCcGUCGCUaacg -5'
12338 5' -57.6 NC_003324.1 + 616 0.66 0.583912
Target:  5'- -aCAUCAAGGCCu-GGCAGCuGGgcUUGCc -3'
miRNA:   3'- gaGUGGUUCCGGccCCGUCG-CU--AACG- -5'
12338 5' -57.6 NC_003324.1 + 46962 0.66 0.57316
Target:  5'- --aGCCAAauucuucuaauuGGCUGaGGGCGGCGAUaacGCc -3'
miRNA:   3'- gagUGGUU------------CCGGC-CCCGUCGCUAa--CG- -5'
12338 5' -57.6 NC_003324.1 + 1868 0.67 0.5307
Target:  5'- gCUCGCUcacGGGCCGGGGUc-CGuucgUGCu -3'
miRNA:   3'- -GAGUGGu--UCCGGCCCCGucGCua--ACG- -5'
12338 5' -57.6 NC_003324.1 + 50018 0.67 0.520257
Target:  5'- aUCGgCAAGcGCUGGGGCcGCuGAUcgGCu -3'
miRNA:   3'- gAGUgGUUC-CGGCCCCGuCG-CUAa-CG- -5'
12338 5' -57.6 NC_003324.1 + 15956 0.67 0.509894
Target:  5'- aUCGaCAAGGCgGGGGCguuGGCGAcgauaagaUGCg -3'
miRNA:   3'- gAGUgGUUCCGgCCCCG---UCGCUa-------ACG- -5'
12338 5' -57.6 NC_003324.1 + 40258 0.68 0.489438
Target:  5'- -cCGCCuugcgugcGGuCCGGGGCuuGGCGggUGCc -3'
miRNA:   3'- gaGUGGuu------CC-GGCCCCG--UCGCuaACG- -5'
12338 5' -57.6 NC_003324.1 + 44895 0.72 0.268012
Target:  5'- -aCGCCGGGGCgCGGGGgCuG-GAUUGCu -3'
miRNA:   3'- gaGUGGUUCCG-GCCCC-GuCgCUAACG- -5'
12338 5' -57.6 NC_003324.1 + 9552 0.69 0.393701
Target:  5'- gUCAgCCGgaguGGGuCUGGGGUGGCGAUgccGCa -3'
miRNA:   3'- gAGU-GGU----UCC-GGCCCCGUCGCUAa--CG- -5'
12338 5' -57.6 NC_003324.1 + 48817 0.69 0.402724
Target:  5'- -cCACCGAGGCCaaugGGGGCGaCGAggUGa -3'
miRNA:   3'- gaGUGGUUCCGG----CCCCGUcGCUa-ACg -5'
12338 5' -57.6 NC_003324.1 + 1517 0.68 0.469374
Target:  5'- -cCAgCGAGGauCCGGcGGCAGUGG-UGCg -3'
miRNA:   3'- gaGUgGUUCC--GGCC-CCGUCGCUaACG- -5'
12338 5' -57.6 NC_003324.1 + 1146 0.68 0.479355
Target:  5'- uCUCGCUGAcGCuCGGGGCgAGCGGgaaGCc -3'
miRNA:   3'- -GAGUGGUUcCG-GCCCCG-UCGCUaa-CG- -5'
12338 5' -57.6 NC_003324.1 + 53817 0.68 0.489438
Target:  5'- -gCACCAAGGUCucgccGGGCuGCGAcaacUGCu -3'
miRNA:   3'- gaGUGGUUCCGGc----CCCGuCGCUa---ACG- -5'
12338 5' -57.6 NC_003324.1 + 18383 1.1 0.000485
Target:  5'- uCUCACCAAGGCCGGGGCAGCGAUUGCc -3'
miRNA:   3'- -GAGUGGUUCCGGCCCCGUCGCUAACG- -5'
12338 5' -57.6 NC_003324.1 + 57059 0.67 0.538056
Target:  5'- -gCAUCAacuaugcucggguuGGGCUGGggagcGGCGGCGAggGCg -3'
miRNA:   3'- gaGUGGU--------------UCCGGCC-----CCGUCGCUaaCG- -5'
12338 5' -57.6 NC_003324.1 + 20253 0.67 0.5307
Target:  5'- uCUgACCGAGGCUGccGGCAGCGuucUGg -3'
miRNA:   3'- -GAgUGGUUCCGGCc-CCGUCGCua-ACg -5'
12338 5' -57.6 NC_003324.1 + 21156 0.67 0.509894
Target:  5'- -gCGCCGcggcGGCCGacaaGGCAGCGuUUGCc -3'
miRNA:   3'- gaGUGGUu---CCGGCc---CCGUCGCuAACG- -5'
12338 5' -57.6 NC_003324.1 + 32177 0.67 0.49962
Target:  5'- cCUCACCGGcgacGaGCCGaGGcGCAGCGAg-GCc -3'
miRNA:   3'- -GAGUGGUU----C-CGGC-CC-CGUCGCUaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.