Results 1 - 20 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 7774 | 0.66 | 0.583912 |
Target: 5'- -gCGCCGGuguuuCCGGGGuCGGCGGUgUGCa -3' miRNA: 3'- gaGUGGUUcc---GGCCCC-GUCGCUA-ACG- -5' |
|||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 18383 | 1.1 | 0.000485 |
Target: 5'- uCUCACCAAGGCCGGGGCAGCGAUUGCc -3' miRNA: 3'- -GAGUGGUUCCGGCCCCGUCGCUAACG- -5' |
|||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 25527 | 0.77 | 0.117111 |
Target: 5'- gCUCGCCAAgugggucGGCUGGGGCGGCc--UGCg -3' miRNA: 3'- -GAGUGGUU-------CCGGCCCCGUCGcuaACG- -5' |
|||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 11762 | 0.72 | 0.28886 |
Target: 5'- uUCugUGAGGCCGuGGCAaUGGUUGCg -3' miRNA: 3'- gAGugGUUCCGGCcCCGUcGCUAACG- -5' |
|||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 13177 | 0.71 | 0.296087 |
Target: 5'- gUCAgCGAGGCUGcgucGGCGGCGGUcgGCg -3' miRNA: 3'- gAGUgGUUCCGGCc---CCGUCGCUAa-CG- -5' |
|||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 50771 | 0.69 | 0.409118 |
Target: 5'- -cCGCCGAGGCgGGGGUcaccgucgaagauuGGCGcUUcGCa -3' miRNA: 3'- gaGUGGUUCCGgCCCCG--------------UCGCuAA-CG- -5' |
|||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 5952 | 0.69 | 0.430564 |
Target: 5'- aUCcCCAAGGCCGGGuGCGGUu----- -3' miRNA: 3'- gAGuGGUUCCGGCCC-CGUCGcuaacg -5' |
|||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 50937 | 0.68 | 0.449738 |
Target: 5'- cCUCGCCAugcugucGCUGGGcgaaccgccuGCAGCGAUguggGCg -3' miRNA: 3'- -GAGUGGUuc-----CGGCCC----------CGUCGCUAa---CG- -5' |
|||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 34490 | 0.68 | 0.4595 |
Target: 5'- aUCACCGAuGCCGaggacGGCGGCGAgucGCc -3' miRNA: 3'- gAGUGGUUcCGGCc----CCGUCGCUaa-CG- -5' |
|||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 32556 | 0.68 | 0.4595 |
Target: 5'- aUCGCCGAGGCUGc--CGGCGAagGCg -3' miRNA: 3'- gAGUGGUUCCGGCcccGUCGCUaaCG- -5' |
|||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 57396 | 0.68 | 0.469374 |
Target: 5'- cCUCACUgcuggAGGGCuCGGcGGaGGCGAggGCg -3' miRNA: 3'- -GAGUGG-----UUCCG-GCC-CCgUCGCUaaCG- -5' |
|||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 39816 | 0.68 | 0.479355 |
Target: 5'- -aCACCAAGGCCGccauGUGGUGGcUGCa -3' miRNA: 3'- gaGUGGUUCCGGCcc--CGUCGCUaACG- -5' |
|||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 32177 | 0.67 | 0.49962 |
Target: 5'- cCUCACCGGcgacGaGCCGaGGcGCAGCGAg-GCc -3' miRNA: 3'- -GAGUGGUU----C-CGGC-CC-CGUCGCUaaCG- -5' |
|||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 21156 | 0.67 | 0.509894 |
Target: 5'- -gCGCCGcggcGGCCGacaaGGCAGCGuUUGCc -3' miRNA: 3'- gaGUGGUu---CCGGCc---CCGUCGCuAACG- -5' |
|||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 20253 | 0.67 | 0.5307 |
Target: 5'- uCUgACCGAGGCUGccGGCAGCGuucUGg -3' miRNA: 3'- -GAgUGGUUCCGGCc-CCGUCGCua-ACg -5' |
|||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 57059 | 0.67 | 0.538056 |
Target: 5'- -gCAUCAacuaugcucggguuGGGCUGGggagcGGCGGCGAggGCg -3' miRNA: 3'- gaGUGGU--------------UCCGGCC-----CCGUCGCUaaCG- -5' |
|||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 38343 | 0.73 | 0.248396 |
Target: 5'- aUCACgAGGGCacCGGGGCGGCGcugGUc -3' miRNA: 3'- gAGUGgUUCCG--GCCCCGUCGCuaaCG- -5' |
|||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 18030 | 0.66 | 0.594702 |
Target: 5'- -gCGCCAcGGGCCaugcgauaGGCGGCGAgUGCc -3' miRNA: 3'- gaGUGGU-UCCGGcc------CCGUCGCUaACG- -5' |
|||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 15472 | 0.66 | 0.594702 |
Target: 5'- --gGCCAAGGCCGaGGaUAGCGAc--- -3' miRNA: 3'- gagUGGUUCCGGC-CCcGUCGCUaacg -5' |
|||||||
12338 | 5' | -57.6 | NC_003324.1 | + | 616 | 0.66 | 0.583912 |
Target: 5'- -aCAUCAAGGCCu-GGCAGCuGGgcUUGCc -3' miRNA: 3'- gaGUGGUUCCGGccCCGUCG-CU--AACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home