Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12339 | 5' | -61.9 | NC_003324.1 | + | 1657 | 0.68 | 0.282598 |
Target: 5'- -cUCGGCCUGCGCCugcUGACGCUgaCGgCg -3' miRNA: 3'- uaGGCUGGGCGCGGc--ACUGCGA--GCgG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 1941 | 0.66 | 0.415456 |
Target: 5'- -cCCGGCCCGUGagcgagcggagaaCUGUGAuCGUcuccaUCGCCu -3' miRNA: 3'- uaGGCUGGGCGC-------------GGCACU-GCG-----AGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 3545 | 0.66 | 0.39872 |
Target: 5'- -aCCGGCugcaaaCgGCGCUucgGUGGCGCcCGCCa -3' miRNA: 3'- uaGGCUG------GgCGCGG---CACUGCGaGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 4541 | 0.7 | 0.232463 |
Target: 5'- -aCCGACaagaugagCCGCGCCGUGaucgaGCGCgCGCa -3' miRNA: 3'- uaGGCUG--------GGCGCGGCAC-----UGCGaGCGg -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 6147 | 0.73 | 0.139161 |
Target: 5'- -aCUGACCCGCGCCGccUGgaauGCGCU-GCCc -3' miRNA: 3'- uaGGCUGGGCGCGGC--AC----UGCGAgCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 6360 | 0.68 | 0.282598 |
Target: 5'- -aCCGGCCa--GCCGcaUGAucuCGCUCGCCu -3' miRNA: 3'- uaGGCUGGgcgCGGC--ACU---GCGAGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 14670 | 0.69 | 0.24425 |
Target: 5'- -aCCG-CCUGCGCCGccgGcCGCUugCGCCg -3' miRNA: 3'- uaGGCuGGGCGCGGCa--CuGCGA--GCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 15133 | 0.7 | 0.232463 |
Target: 5'- -gUCGACaCgGCGCCacGUGAaaagGCUCGCCg -3' miRNA: 3'- uaGGCUG-GgCGCGG--CACUg---CGAGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 16904 | 0.67 | 0.364933 |
Target: 5'- aGUUC-ACCaGUGCCGccuUGAUGCUUGCCg -3' miRNA: 3'- -UAGGcUGGgCGCGGC---ACUGCGAGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 17259 | 0.69 | 0.24425 |
Target: 5'- cGUCCGACagaCGCGCCa--GCGCcUCGUCa -3' miRNA: 3'- -UAGGCUGg--GCGCGGcacUGCG-AGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 17891 | 0.72 | 0.171474 |
Target: 5'- -cCCGaAUgCGCGCCGUGAgGCacgcuaccagaUCGCCg -3' miRNA: 3'- uaGGC-UGgGCGCGGCACUgCG-----------AGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 18145 | 0.67 | 0.356802 |
Target: 5'- -gCCGAgguguggaaCCGCGaaGUGACGgcaCUCGCCg -3' miRNA: 3'- uaGGCUg--------GGCGCggCACUGC---GAGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 18585 | 1.1 | 0.000243 |
Target: 5'- gAUCCGACCCGCGCCGUGACGCUCGCCa -3' miRNA: 3'- -UAGGCUGGGCGCGGCACUGCGAGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 19390 | 0.68 | 0.313647 |
Target: 5'- -gCCGGCgcgcgUCGCGCCGUgcaugaggucggcuaGAUGCUgCGCCu -3' miRNA: 3'- uaGGCUG-----GGCGCGGCA---------------CUGCGA-GCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 20590 | 0.71 | 0.194936 |
Target: 5'- ---gGAUCCgGUGCUGUGGCGCcgUCGCCa -3' miRNA: 3'- uaggCUGGG-CGCGGCACUGCG--AGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 20623 | 0.7 | 0.210326 |
Target: 5'- gAUCCGacuguuGCCgGCGCUGaugGGCGCUUGCg -3' miRNA: 3'- -UAGGC------UGGgCGCGGCa--CUGCGAGCGg -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 21671 | 0.68 | 0.303495 |
Target: 5'- uGUUCGGCUCGaCGCCGaaGAUGggCGCCg -3' miRNA: 3'- -UAGGCUGGGC-GCGGCa-CUGCgaGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 23246 | 0.73 | 0.135539 |
Target: 5'- -gCCGACCauaccguggGCGCCGgcaaGACGUUUGCCg -3' miRNA: 3'- uaGGCUGGg--------CGCGGCa---CUGCGAGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 24394 | 0.68 | 0.310721 |
Target: 5'- -gCCGGCauggugCGCGuCCGcGACGCcuUCGCCa -3' miRNA: 3'- uaGGCUGg-----GCGC-GGCaCUGCG--AGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 27796 | 0.69 | 0.275889 |
Target: 5'- gGUUCGguGCCCGCgauaagGCCGaGGCGCacaUCGCCa -3' miRNA: 3'- -UAGGC--UGGGCG------CGGCaCUGCG---AGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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