Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12339 | 5' | -61.9 | NC_003324.1 | + | 49087 | 0.66 | 0.415456 |
Target: 5'- -gCCGAaagcggcgucuauUUCGCuGCCgGUGACGCgaUCGCCa -3' miRNA: 3'- uaGGCU-------------GGGCG-CGG-CACUGCG--AGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 30509 | 0.68 | 0.289434 |
Target: 5'- -aCUGcGCCUGCGaCCGUGGCGaccuUCGCUg -3' miRNA: 3'- uaGGC-UGGGCGC-GGCACUGCg---AGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 36748 | 0.68 | 0.2964 |
Target: 5'- cAUCCGAUgCGagGcCCGUGgaGCGCUgGCCg -3' miRNA: 3'- -UAGGCUGgGCg-C-GGCAC--UGCGAgCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 19390 | 0.68 | 0.313647 |
Target: 5'- -gCCGGCgcgcgUCGCGCCGUgcaugaggucggcuaGAUGCUgCGCCu -3' miRNA: 3'- uaGGCUG-----GGCGCGGCA---------------CUGCGA-GCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 32186 | 0.67 | 0.364933 |
Target: 5'- -gCCGACgCGCGUCGUG-CGCg-GCa -3' miRNA: 3'- uaGGCUGgGCGCGGCACuGCGagCGg -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 31864 | 0.67 | 0.373192 |
Target: 5'- --aUGAUCUGCGCC-UGACGCUCuggGCUu -3' miRNA: 3'- uagGCUGGGCGCGGcACUGCGAG---CGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 35302 | 0.66 | 0.381578 |
Target: 5'- aGUCCGA-UCGCGCCGgcgGAUug-CGCCg -3' miRNA: 3'- -UAGGCUgGGCGCGGCa--CUGcgaGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 42576 | 0.66 | 0.397852 |
Target: 5'- -aCCGugCCgGCagccucgcuguagGCCGUGACGCgauacuUCGUCu -3' miRNA: 3'- uaGGCugGG-CG-------------CGGCACUGCG------AGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 3545 | 0.66 | 0.39872 |
Target: 5'- -aCCGGCugcaaaCgGCGCUucgGUGGCGCcCGCCa -3' miRNA: 3'- uaGGCUG------GgCGCGG---CACUGCGaGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 1657 | 0.68 | 0.282598 |
Target: 5'- -cUCGGCCUGCGCCugcUGACGCUgaCGgCg -3' miRNA: 3'- uaGGCUGGGCGCGGc--ACUGCGA--GCgG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 32260 | 0.7 | 0.232463 |
Target: 5'- -cCCcGgUCGUGUCGgGACGCUCGCCa -3' miRNA: 3'- uaGGcUgGGCGCGGCaCUGCGAGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 4541 | 0.7 | 0.232463 |
Target: 5'- -aCCGACaagaugagCCGCGCCGUGaucgaGCGCgCGCa -3' miRNA: 3'- uaGGCUG--------GGCGCGGCAC-----UGCGaGCGg -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 35851 | 0.73 | 0.139161 |
Target: 5'- gAUUCGACCUGCGCCuggcgaacaGUGGCGC--GCCa -3' miRNA: 3'- -UAGGCUGGGCGCGG---------CACUGCGagCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 54862 | 0.73 | 0.150567 |
Target: 5'- uUCCGAcCCCGCaggcCCG-GAUGCUCGCg -3' miRNA: 3'- uAGGCU-GGGCGc---GGCaCUGCGAGCGg -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 47759 | 0.72 | 0.162817 |
Target: 5'- uUCuCGGCaCCGgGCCGUGAgGCU-GCCu -3' miRNA: 3'- uAG-GCUG-GGCgCGGCACUgCGAgCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 33423 | 0.72 | 0.175956 |
Target: 5'- -cCCGAgCCGCuucaucggcguuGuCCGUGuaACGCUCGCCg -3' miRNA: 3'- uaGGCUgGGCG------------C-GGCAC--UGCGAGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 31681 | 0.71 | 0.178235 |
Target: 5'- cAUCCGAgaucggccgcaucCCCGUGCUgGUGACGCgaaccaccaggagCGCCg -3' miRNA: 3'- -UAGGCU-------------GGGCGCGG-CACUGCGa------------GCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 20590 | 0.71 | 0.194936 |
Target: 5'- ---gGAUCCgGUGCUGUGGCGCcgUCGCCa -3' miRNA: 3'- uaggCUGGG-CGCGGCACUGCG--AGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 29420 | 0.71 | 0.205083 |
Target: 5'- gGUCuCGAUgCGCGCCGgGAacCGgUCGCCa -3' miRNA: 3'- -UAG-GCUGgGCGCGGCaCU--GCgAGCGG- -5' |
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12339 | 5' | -61.9 | NC_003324.1 | + | 15133 | 0.7 | 0.232463 |
Target: 5'- -gUCGACaCgGCGCCacGUGAaaagGCUCGCCg -3' miRNA: 3'- uaGGCUG-GgCGCGG--CACUg---CGAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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