miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12339 5' -61.9 NC_003324.1 + 15133 0.7 0.232463
Target:  5'- -gUCGACaCgGCGCCacGUGAaaagGCUCGCCg -3'
miRNA:   3'- uaGGCUG-GgCGCGG--CACUg---CGAGCGG- -5'
12339 5' -61.9 NC_003324.1 + 4541 0.7 0.232463
Target:  5'- -aCCGACaagaugagCCGCGCCGUGaucgaGCGCgCGCa -3'
miRNA:   3'- uaGGCUG--------GGCGCGGCAC-----UGCGaGCGg -5'
12339 5' -61.9 NC_003324.1 + 6360 0.68 0.282598
Target:  5'- -aCCGGCCa--GCCGcaUGAucuCGCUCGCCu -3'
miRNA:   3'- uaGGCUGGgcgCGGC--ACU---GCGAGCGG- -5'
12339 5' -61.9 NC_003324.1 + 27796 0.69 0.275889
Target:  5'- gGUUCGguGCCCGCgauaagGCCGaGGCGCacaUCGCCa -3'
miRNA:   3'- -UAGGC--UGGGCG------CGGCaCUGCG---AGCGG- -5'
12339 5' -61.9 NC_003324.1 + 17259 0.69 0.24425
Target:  5'- cGUCCGACagaCGCGCCa--GCGCcUCGUCa -3'
miRNA:   3'- -UAGGCUGg--GCGCGGcacUGCG-AGCGG- -5'
12339 5' -61.9 NC_003324.1 + 14670 0.69 0.24425
Target:  5'- -aCCG-CCUGCGCCGccgGcCGCUugCGCCg -3'
miRNA:   3'- uaGGCuGGGCGCGGCa--CuGCGA--GCGG- -5'
12339 5' -61.9 NC_003324.1 + 20623 0.7 0.210326
Target:  5'- gAUCCGacuguuGCCgGCGCUGaugGGCGCUUGCg -3'
miRNA:   3'- -UAGGC------UGGgCGCGGCa--CUGCGAGCGg -5'
12339 5' -61.9 NC_003324.1 + 17891 0.72 0.171474
Target:  5'- -cCCGaAUgCGCGCCGUGAgGCacgcuaccagaUCGCCg -3'
miRNA:   3'- uaGGC-UGgGCGCGGCACUgCG-----------AGCGG- -5'
12339 5' -61.9 NC_003324.1 + 23246 0.73 0.135539
Target:  5'- -gCCGACCauaccguggGCGCCGgcaaGACGUUUGCCg -3'
miRNA:   3'- uaGGCUGGg--------CGCGGCa---CUGCGAGCGG- -5'
12339 5' -61.9 NC_003324.1 + 45796 0.75 0.100249
Target:  5'- cAUCCGAUCCGUGCCGUcgccugauugcccuGcucACGCcUCGCCg -3'
miRNA:   3'- -UAGGCUGGGCGCGGCA--------------C---UGCG-AGCGG- -5'
12339 5' -61.9 NC_003324.1 + 31319 0.68 0.2964
Target:  5'- aGUgCGGCCgGCGgCGcUGGCGCUgGCg -3'
miRNA:   3'- -UAgGCUGGgCGCgGC-ACUGCGAgCGg -5'
12339 5' -61.9 NC_003324.1 + 21671 0.68 0.303495
Target:  5'- uGUUCGGCUCGaCGCCGaaGAUGggCGCCg -3'
miRNA:   3'- -UAGGCUGGGC-GCGGCa-CUGCgaGCGG- -5'
12339 5' -61.9 NC_003324.1 + 36542 0.66 0.424435
Target:  5'- cUCCGAUCUggaacaaGCGCCGcgGGCGCgacggcaUGCCc -3'
miRNA:   3'- uAGGCUGGG-------CGCGGCa-CUGCGa------GCGG- -5'
12339 5' -61.9 NC_003324.1 + 1941 0.66 0.415456
Target:  5'- -cCCGGCCCGUGagcgagcggagaaCUGUGAuCGUcuccaUCGCCu -3'
miRNA:   3'- uaGGCUGGGCGC-------------GGCACU-GCG-----AGCGG- -5'
12339 5' -61.9 NC_003324.1 + 16904 0.67 0.364933
Target:  5'- aGUUC-ACCaGUGCCGccuUGAUGCUUGCCg -3'
miRNA:   3'- -UAGGcUGGgCGCGGC---ACUGCGAGCGG- -5'
12339 5' -61.9 NC_003324.1 + 30136 0.67 0.364933
Target:  5'- uGUCgCGACCgGCGgCGUGAUGggCGgCg -3'
miRNA:   3'- -UAG-GCUGGgCGCgGCACUGCgaGCgG- -5'
12339 5' -61.9 NC_003324.1 + 18145 0.67 0.356802
Target:  5'- -gCCGAgguguggaaCCGCGaaGUGACGgcaCUCGCCg -3'
miRNA:   3'- uaGGCUg--------GGCGCggCACUGC---GAGCGG- -5'
12339 5' -61.9 NC_003324.1 + 37525 0.68 0.325562
Target:  5'- cUCCauCCCGCGCUGUGcgcggcaauGCGCUCGa- -3'
miRNA:   3'- uAGGcuGGGCGCGGCAC---------UGCGAGCgg -5'
12339 5' -61.9 NC_003324.1 + 53494 0.68 0.317335
Target:  5'- aGUUCGAgCCguaguagGCGCCGUGAcCGCgauGCCa -3'
miRNA:   3'- -UAGGCUgGG-------CGCGGCACU-GCGag-CGG- -5'
12339 5' -61.9 NC_003324.1 + 24394 0.68 0.310721
Target:  5'- -gCCGGCauggugCGCGuCCGcGACGCcuUCGCCa -3'
miRNA:   3'- uaGGCUGg-----GCGC-GGCaCUGCG--AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.