miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12339 5' -61.9 NC_003324.1 + 6360 0.68 0.282598
Target:  5'- -aCCGGCCa--GCCGcaUGAucuCGCUCGCCu -3'
miRNA:   3'- uaGGCUGGgcgCGGC--ACU---GCGAGCGG- -5'
12339 5' -61.9 NC_003324.1 + 30509 0.68 0.289434
Target:  5'- -aCUGcGCCUGCGaCCGUGGCGaccuUCGCUg -3'
miRNA:   3'- uaGGC-UGGGCGC-GGCACUGCg---AGCGG- -5'
12339 5' -61.9 NC_003324.1 + 36748 0.68 0.2964
Target:  5'- cAUCCGAUgCGagGcCCGUGgaGCGCUgGCCg -3'
miRNA:   3'- -UAGGCUGgGCg-C-GGCAC--UGCGAgCGG- -5'
12339 5' -61.9 NC_003324.1 + 31319 0.68 0.2964
Target:  5'- aGUgCGGCCgGCGgCGcUGGCGCUgGCg -3'
miRNA:   3'- -UAgGCUGGgCGCgGC-ACUGCGAgCGg -5'
12339 5' -61.9 NC_003324.1 + 21671 0.68 0.303495
Target:  5'- uGUUCGGCUCGaCGCCGaaGAUGggCGCCg -3'
miRNA:   3'- -UAGGCUGGGC-GCGGCa-CUGCgaGCGG- -5'
12339 5' -61.9 NC_003324.1 + 24394 0.68 0.310721
Target:  5'- -gCCGGCauggugCGCGuCCGcGACGCcuUCGCCa -3'
miRNA:   3'- uaGGCUGg-----GCGC-GGCaCUGCG--AGCGG- -5'
12339 5' -61.9 NC_003324.1 + 19390 0.68 0.313647
Target:  5'- -gCCGGCgcgcgUCGCGCCGUgcaugaggucggcuaGAUGCUgCGCCu -3'
miRNA:   3'- uaGGCUG-----GGCGCGGCA---------------CUGCGA-GCGG- -5'
12339 5' -61.9 NC_003324.1 + 53494 0.68 0.317335
Target:  5'- aGUUCGAgCCguaguagGCGCCGUGAcCGCgauGCCa -3'
miRNA:   3'- -UAGGCUgGG-------CGCGGCACU-GCGag-CGG- -5'
12339 5' -61.9 NC_003324.1 + 37525 0.68 0.325562
Target:  5'- cUCCauCCCGCGCUGUGcgcggcaauGCGCUCGa- -3'
miRNA:   3'- uAGGcuGGGCGCGGCAC---------UGCGAGCgg -5'
12339 5' -61.9 NC_003324.1 + 18145 0.67 0.356802
Target:  5'- -gCCGAgguguggaaCCGCGaaGUGACGgcaCUCGCCg -3'
miRNA:   3'- uaGGCUg--------GGCGCggCACUGC---GAGCGG- -5'
12339 5' -61.9 NC_003324.1 + 16904 0.67 0.364933
Target:  5'- aGUUC-ACCaGUGCCGccuUGAUGCUUGCCg -3'
miRNA:   3'- -UAGGcUGGgCGCGGC---ACUGCGAGCGG- -5'
12339 5' -61.9 NC_003324.1 + 30136 0.67 0.364933
Target:  5'- uGUCgCGACCgGCGgCGUGAUGggCGgCg -3'
miRNA:   3'- -UAG-GCUGGgCGCgGCACUGCgaGCgG- -5'
12339 5' -61.9 NC_003324.1 + 32186 0.67 0.364933
Target:  5'- -gCCGACgCGCGUCGUG-CGCg-GCa -3'
miRNA:   3'- uaGGCUGgGCGCGGCACuGCGagCGg -5'
12339 5' -61.9 NC_003324.1 + 31864 0.67 0.373192
Target:  5'- --aUGAUCUGCGCC-UGACGCUCuggGCUu -3'
miRNA:   3'- uagGCUGGGCGCGGcACUGCGAG---CGG- -5'
12339 5' -61.9 NC_003324.1 + 35302 0.66 0.381578
Target:  5'- aGUCCGA-UCGCGCCGgcgGAUug-CGCCg -3'
miRNA:   3'- -UAGGCUgGGCGCGGCa--CUGcgaGCGG- -5'
12339 5' -61.9 NC_003324.1 + 42576 0.66 0.397852
Target:  5'- -aCCGugCCgGCagccucgcuguagGCCGUGACGCgauacuUCGUCu -3'
miRNA:   3'- uaGGCugGG-CG-------------CGGCACUGCG------AGCGG- -5'
12339 5' -61.9 NC_003324.1 + 3545 0.66 0.39872
Target:  5'- -aCCGGCugcaaaCgGCGCUucgGUGGCGCcCGCCa -3'
miRNA:   3'- uaGGCUG------GgCGCGG---CACUGCGaGCGG- -5'
12339 5' -61.9 NC_003324.1 + 1941 0.66 0.415456
Target:  5'- -cCCGGCCCGUGagcgagcggagaaCUGUGAuCGUcuccaUCGCCu -3'
miRNA:   3'- uaGGCUGGGCGC-------------GGCACU-GCG-----AGCGG- -5'
12339 5' -61.9 NC_003324.1 + 49087 0.66 0.415456
Target:  5'- -gCCGAaagcggcgucuauUUCGCuGCCgGUGACGCgaUCGCCa -3'
miRNA:   3'- uaGGCU-------------GGGCG-CGG-CACUGCG--AGCGG- -5'
12339 5' -61.9 NC_003324.1 + 40403 0.66 0.416348
Target:  5'- -aCCGGCCUuCGCCuucgucUGGCGCuUCGUCg -3'
miRNA:   3'- uaGGCUGGGcGCGGc-----ACUGCG-AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.