miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12339 5' -61.9 NC_003324.1 + 1657 0.68 0.282598
Target:  5'- -cUCGGCCUGCGCCugcUGACGCUgaCGgCg -3'
miRNA:   3'- uaGGCUGGGCGCGGc--ACUGCGA--GCgG- -5'
12339 5' -61.9 NC_003324.1 + 6360 0.68 0.282598
Target:  5'- -aCCGGCCa--GCCGcaUGAucuCGCUCGCCu -3'
miRNA:   3'- uaGGCUGGgcgCGGC--ACU---GCGAGCGG- -5'
12339 5' -61.9 NC_003324.1 + 27796 0.69 0.275889
Target:  5'- gGUUCGguGCCCGCgauaagGCCGaGGCGCacaUCGCCa -3'
miRNA:   3'- -UAGGC--UGGGCG------CGGCaCUGCG---AGCGG- -5'
12339 5' -61.9 NC_003324.1 + 17259 0.69 0.24425
Target:  5'- cGUCCGACagaCGCGCCa--GCGCcUCGUCa -3'
miRNA:   3'- -UAGGCUGg--GCGCGGcacUGCG-AGCGG- -5'
12339 5' -61.9 NC_003324.1 + 14670 0.69 0.24425
Target:  5'- -aCCG-CCUGCGCCGccgGcCGCUugCGCCg -3'
miRNA:   3'- uaGGCuGGGCGCGGCa--CuGCGA--GCGG- -5'
12339 5' -61.9 NC_003324.1 + 32260 0.7 0.232463
Target:  5'- -cCCcGgUCGUGUCGgGACGCUCGCCa -3'
miRNA:   3'- uaGGcUgGGCGCGGCaCUGCGAGCGG- -5'
12339 5' -61.9 NC_003324.1 + 15133 0.7 0.232463
Target:  5'- -gUCGACaCgGCGCCacGUGAaaagGCUCGCCg -3'
miRNA:   3'- uaGGCUG-GgCGCGG--CACUg---CGAGCGG- -5'
12339 5' -61.9 NC_003324.1 + 4541 0.7 0.232463
Target:  5'- -aCCGACaagaugagCCGCGCCGUGaucgaGCGCgCGCa -3'
miRNA:   3'- uaGGCUG--------GGCGCGGCAC-----UGCGaGCGg -5'
12339 5' -61.9 NC_003324.1 + 20623 0.7 0.210326
Target:  5'- gAUCCGacuguuGCCgGCGCUGaugGGCGCUUGCg -3'
miRNA:   3'- -UAGGC------UGGgCGCGGCa--CUGCGAGCGg -5'
12339 5' -61.9 NC_003324.1 + 29420 0.71 0.205083
Target:  5'- gGUCuCGAUgCGCGCCGgGAacCGgUCGCCa -3'
miRNA:   3'- -UAG-GCUGgGCGCGGCaCU--GCgAGCGG- -5'
12339 5' -61.9 NC_003324.1 + 20590 0.71 0.194936
Target:  5'- ---gGAUCCgGUGCUGUGGCGCcgUCGCCa -3'
miRNA:   3'- uaggCUGGG-CGCGGCACUGCG--AGCGG- -5'
12339 5' -61.9 NC_003324.1 + 31681 0.71 0.178235
Target:  5'- cAUCCGAgaucggccgcaucCCCGUGCUgGUGACGCgaaccaccaggagCGCCg -3'
miRNA:   3'- -UAGGCU-------------GGGCGCGG-CACUGCGa------------GCGG- -5'
12339 5' -61.9 NC_003324.1 + 33423 0.72 0.175956
Target:  5'- -cCCGAgCCGCuucaucggcguuGuCCGUGuaACGCUCGCCg -3'
miRNA:   3'- uaGGCUgGGCG------------C-GGCAC--UGCGAGCGG- -5'
12339 5' -61.9 NC_003324.1 + 17891 0.72 0.171474
Target:  5'- -cCCGaAUgCGCGCCGUGAgGCacgcuaccagaUCGCCg -3'
miRNA:   3'- uaGGC-UGgGCGCGGCACUgCG-----------AGCGG- -5'
12339 5' -61.9 NC_003324.1 + 47759 0.72 0.162817
Target:  5'- uUCuCGGCaCCGgGCCGUGAgGCU-GCCu -3'
miRNA:   3'- uAG-GCUG-GGCgCGGCACUgCGAgCGG- -5'
12339 5' -61.9 NC_003324.1 + 54862 0.73 0.150567
Target:  5'- uUCCGAcCCCGCaggcCCG-GAUGCUCGCg -3'
miRNA:   3'- uAGGCU-GGGCGc---GGCaCUGCGAGCGg -5'
12339 5' -61.9 NC_003324.1 + 35851 0.73 0.139161
Target:  5'- gAUUCGACCUGCGCCuggcgaacaGUGGCGC--GCCa -3'
miRNA:   3'- -UAGGCUGGGCGCGG---------CACUGCGagCGG- -5'
12339 5' -61.9 NC_003324.1 + 6147 0.73 0.139161
Target:  5'- -aCUGACCCGCGCCGccUGgaauGCGCU-GCCc -3'
miRNA:   3'- uaGGCUGGGCGCGGC--AC----UGCGAgCGG- -5'
12339 5' -61.9 NC_003324.1 + 23246 0.73 0.135539
Target:  5'- -gCCGACCauaccguggGCGCCGgcaaGACGUUUGCCg -3'
miRNA:   3'- uaGGCUGGg--------CGCGGCa---CUGCGAGCGG- -5'
12339 5' -61.9 NC_003324.1 + 45796 0.75 0.100249
Target:  5'- cAUCCGAUCCGUGCCGUcgccugauugcccuGcucACGCcUCGCCg -3'
miRNA:   3'- -UAGGCUGGGCGCGGCA--------------C---UGCG-AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.