miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12342 5' -54.2 NC_003324.1 + 19503 1.02 0.003446
Target:  5'- gGACAAGGCC-AGGCGCAGCAUCUAGCc -3'
miRNA:   3'- -CUGUUCCGGuUCCGCGUCGUAGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 6222 0.84 0.063074
Target:  5'- --gAAGGCCGAGGCGCAGCAgc-AGCg -3'
miRNA:   3'- cugUUCCGGUUCCGCGUCGUagaUCG- -5'
12342 5' -54.2 NC_003324.1 + 27783 0.8 0.130657
Target:  5'- cGAUAAGGCCGAGGCGCA-CAUCg--- -3'
miRNA:   3'- -CUGUUCCGGUUCCGCGUcGUAGaucg -5'
12342 5' -54.2 NC_003324.1 + 32168 0.76 0.22154
Target:  5'- cGACGA-GCCGAGGCGCAGCGa--GGCc -3'
miRNA:   3'- -CUGUUcCGGUUCCGCGUCGUagaUCG- -5'
12342 5' -54.2 NC_003324.1 + 48577 0.74 0.2883
Target:  5'- uGAUGAGGgCAAGGacaGCGGCGUCgcAGCg -3'
miRNA:   3'- -CUGUUCCgGUUCCg--CGUCGUAGa-UCG- -5'
12342 5' -54.2 NC_003324.1 + 47094 0.74 0.303414
Target:  5'- cGACAcGuGCggCGAGGUGCGGCAagUCUGGCg -3'
miRNA:   3'- -CUGUuC-CG--GUUCCGCGUCGU--AGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 11658 0.72 0.387992
Target:  5'- cGGCAGGaGCCGcGGGaGCAGCAUC-GGCu -3'
miRNA:   3'- -CUGUUC-CGGU-UCCgCGUCGUAGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 21572 0.72 0.39726
Target:  5'- aGCAAcGCgAcGGGCGCGGCAUCcGGCa -3'
miRNA:   3'- cUGUUcCGgU-UCCGCGUCGUAGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 35211 0.72 0.406668
Target:  5'- aGGCGcugAGGUCAAcGGCGaCGGCG-CUGGCg -3'
miRNA:   3'- -CUGU---UCCGGUU-CCGC-GUCGUaGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 34155 0.71 0.425898
Target:  5'- gGACAGGGCgGAGcCGCuGGCAUUgGGCg -3'
miRNA:   3'- -CUGUUCCGgUUCcGCG-UCGUAGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 35723 0.71 0.455729
Target:  5'- --gGAGGCCGAGGCcaaacaGCAGCAgaugaugCUGcGCg -3'
miRNA:   3'- cugUUCCGGUUCCG------CGUCGUa------GAU-CG- -5'
12342 5' -54.2 NC_003324.1 + 31322 0.71 0.455729
Target:  5'- cGCAGugcGGCCGGcGGCGCuGGCG-CUGGCg -3'
miRNA:   3'- cUGUU---CCGGUU-CCGCG-UCGUaGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 21212 0.71 0.465921
Target:  5'- uGACGAGGCCGAGaugcuGCGCaAGCG-CcAGCc -3'
miRNA:   3'- -CUGUUCCGGUUC-----CGCG-UCGUaGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 15466 0.71 0.465921
Target:  5'- gGGCGAGGCCAAGGCcgaggaUAGCGacgaCUGGUu -3'
miRNA:   3'- -CUGUUCCGGUUCCGc-----GUCGUa---GAUCG- -5'
12342 5' -54.2 NC_003324.1 + 44816 0.71 0.465921
Target:  5'- uGCGGGGagaAGGGgGCGGCGUCauUGGCg -3'
miRNA:   3'- cUGUUCCgg-UUCCgCGUCGUAG--AUCG- -5'
12342 5' -54.2 NC_003324.1 + 49470 0.7 0.473125
Target:  5'- cGACGAGgacuauGCCAAGGUGCcgguccgcaacgagGGCGgcauUCUGGCa -3'
miRNA:   3'- -CUGUUC------CGGUUCCGCG--------------UCGU----AGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 47983 0.7 0.486651
Target:  5'- gGAUAAgccGGCCAucGGCGCAGCAcgguUC-GGCa -3'
miRNA:   3'- -CUGUU---CCGGUu-CCGCGUCGU----AGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 21366 0.7 0.507808
Target:  5'- cGGCGAacgcGGCCGAGaugaaaGCgGCAGCGUCgGGCa -3'
miRNA:   3'- -CUGUU----CCGGUUC------CG-CGUCGUAGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 57372 0.7 0.517455
Target:  5'- aGGCGAGGgCGGcacgaccGGCGUugAGCAUCUgAGCg -3'
miRNA:   3'- -CUGUUCCgGUU-------CCGCG--UCGUAGA-UCG- -5'
12342 5' -54.2 NC_003324.1 + 30428 0.7 0.518532
Target:  5'- -uCAAGGCUcugacgGAGGaUGCAGCAUCgcaGGCc -3'
miRNA:   3'- cuGUUCCGG------UUCC-GCGUCGUAGa--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.