miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12342 5' -54.2 NC_003324.1 + 47094 0.74 0.303414
Target:  5'- cGACAcGuGCggCGAGGUGCGGCAagUCUGGCg -3'
miRNA:   3'- -CUGUuC-CG--GUUCCGCGUCGU--AGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 44301 0.67 0.674322
Target:  5'- cGACGaaccGGGCgCGGuGGCGCGGCcgaUAGCc -3'
miRNA:   3'- -CUGU----UCCG-GUU-CCGCGUCGuagAUCG- -5'
12342 5' -54.2 NC_003324.1 + 22011 0.67 0.674322
Target:  5'- cGACGAGGCgCAugucGaGCGCAGCcUUgcGCg -3'
miRNA:   3'- -CUGUUCCG-GUu---C-CGCGUCGuAGauCG- -5'
12342 5' -54.2 NC_003324.1 + 42662 0.67 0.674322
Target:  5'- aGCAAGGCCAuucgccGGGCcaccaggacCGGCAaccgCUGGCg -3'
miRNA:   3'- cUGUUCCGGU------UCCGc--------GUCGUa---GAUCG- -5'
12342 5' -54.2 NC_003324.1 + 2081 0.67 0.663122
Target:  5'- gGACAAGGUCgAAGGUGCAuauaaccguGCGg--AGCa -3'
miRNA:   3'- -CUGUUCCGG-UUCCGCGU---------CGUagaUCG- -5'
12342 5' -54.2 NC_003324.1 + 57019 0.68 0.640643
Target:  5'- uGGCGAGGCCcgaAAGGCgGguGgAUCUAcgacGCu -3'
miRNA:   3'- -CUGUUCCGG---UUCCG-CguCgUAGAU----CG- -5'
12342 5' -54.2 NC_003324.1 + 2198 0.68 0.638392
Target:  5'- cACGGGGCCGAGGaaaaaccucaAGCAagUAGCg -3'
miRNA:   3'- cUGUUCCGGUUCCgcg-------UCGUagAUCG- -5'
12342 5' -54.2 NC_003324.1 + 32958 0.68 0.629386
Target:  5'- cGugAAGGUCAc-GCGCuGCAUCU-GCu -3'
miRNA:   3'- -CugUUCCGGUucCGCGuCGUAGAuCG- -5'
12342 5' -54.2 NC_003324.1 + 14519 0.68 0.618131
Target:  5'- cGGCAGGGCguccgcgaCAAGGCGCuGGCG-CUcaaGGCc -3'
miRNA:   3'- -CUGUUCCG--------GUUCCGCG-UCGUaGA---UCG- -5'
12342 5' -54.2 NC_003324.1 + 14589 0.68 0.606889
Target:  5'- cGCAAgcGGCCGGcGGCGCAgGCGg-UAGCg -3'
miRNA:   3'- cUGUU--CCGGUU-CCGCGU-CGUagAUCG- -5'
12342 5' -54.2 NC_003324.1 + 32299 0.68 0.605766
Target:  5'- cGACAAcGGCCucugcgcGGCGCcGCAUCUccggauccugcauGGCc -3'
miRNA:   3'- -CUGUU-CCGGuu-----CCGCGuCGUAGA-------------UCG- -5'
12342 5' -54.2 NC_003324.1 + 14693 0.68 0.59567
Target:  5'- gGGCAGGGCuucCAAGGUGCGauGCAg--GGCu -3'
miRNA:   3'- -CUGUUCCG---GUUCCGCGU--CGUagaUCG- -5'
12342 5' -54.2 NC_003324.1 + 29467 0.69 0.584483
Target:  5'- uGACAcGGCCGccuggcugcGGGCGCGucgggcGCAUCUcGGUa -3'
miRNA:   3'- -CUGUuCCGGU---------UCCGCGU------CGUAGA-UCG- -5'
12342 5' -54.2 NC_003324.1 + 51571 0.69 0.584483
Target:  5'- cGCAAGGgUAAGGCGCcuucGGUAUUcccgAGCa -3'
miRNA:   3'- cUGUUCCgGUUCCGCG----UCGUAGa---UCG- -5'
12342 5' -54.2 NC_003324.1 + 51721 0.69 0.550107
Target:  5'- aGCGAGGCCGacgcaaucgccgaGGGCGCcaAGCAguauUCgAGCu -3'
miRNA:   3'- cUGUUCCGGU-------------UCCGCG--UCGU----AGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 35566 0.7 0.518532
Target:  5'- uGCAAGGCCu--GCGCcuGCGUCUucuGCg -3'
miRNA:   3'- cUGUUCCGGuucCGCGu-CGUAGAu--CG- -5'
12342 5' -54.2 NC_003324.1 + 49470 0.7 0.473125
Target:  5'- cGACGAGgacuauGCCAAGGUGCcgguccgcaacgagGGCGgcauUCUGGCa -3'
miRNA:   3'- -CUGUUC------CGGUUCCGCG--------------UCGU----AGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 15466 0.71 0.465921
Target:  5'- gGGCGAGGCCAAGGCcgaggaUAGCGacgaCUGGUu -3'
miRNA:   3'- -CUGUUCCGGUUCCGc-----GUCGUa---GAUCG- -5'
12342 5' -54.2 NC_003324.1 + 44816 0.71 0.465921
Target:  5'- uGCGGGGagaAGGGgGCGGCGUCauUGGCg -3'
miRNA:   3'- cUGUUCCgg-UUCCgCGUCGUAG--AUCG- -5'
12342 5' -54.2 NC_003324.1 + 6222 0.84 0.063074
Target:  5'- --gAAGGCCGAGGCGCAGCAgc-AGCg -3'
miRNA:   3'- cugUUCCGGUUCCGCGUCGUagaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.