miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12342 5' -54.2 NC_003324.1 + 49470 0.7 0.473125
Target:  5'- cGACGAGgacuauGCCAAGGUGCcgguccgcaacgagGGCGgcauUCUGGCa -3'
miRNA:   3'- -CUGUUC------CGGUUCCGCG--------------UCGU----AGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 35566 0.7 0.518532
Target:  5'- uGCAAGGCCu--GCGCcuGCGUCUucuGCg -3'
miRNA:   3'- cUGUUCCGGuucCGCGu-CGUAGAu--CG- -5'
12342 5' -54.2 NC_003324.1 + 51721 0.69 0.550107
Target:  5'- aGCGAGGCCGacgcaaucgccgaGGGCGCcaAGCAguauUCgAGCu -3'
miRNA:   3'- cUGUUCCGGU-------------UCCGCG--UCGU----AGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 51571 0.69 0.584483
Target:  5'- cGCAAGGgUAAGGCGCcuucGGUAUUcccgAGCa -3'
miRNA:   3'- cUGUUCCgGUUCCGCG----UCGUAGa---UCG- -5'
12342 5' -54.2 NC_003324.1 + 29467 0.69 0.584483
Target:  5'- uGACAcGGCCGccuggcugcGGGCGCGucgggcGCAUCUcGGUa -3'
miRNA:   3'- -CUGUuCCGGU---------UCCGCGU------CGUAGA-UCG- -5'
12342 5' -54.2 NC_003324.1 + 14693 0.68 0.59567
Target:  5'- gGGCAGGGCuucCAAGGUGCGauGCAg--GGCu -3'
miRNA:   3'- -CUGUUCCG---GUUCCGCGU--CGUagaUCG- -5'
12342 5' -54.2 NC_003324.1 + 32299 0.68 0.605766
Target:  5'- cGACAAcGGCCucugcgcGGCGCcGCAUCUccggauccugcauGGCc -3'
miRNA:   3'- -CUGUU-CCGGuu-----CCGCGuCGUAGA-------------UCG- -5'
12342 5' -54.2 NC_003324.1 + 14589 0.68 0.606889
Target:  5'- cGCAAgcGGCCGGcGGCGCAgGCGg-UAGCg -3'
miRNA:   3'- cUGUU--CCGGUU-CCGCGU-CGUagAUCG- -5'
12342 5' -54.2 NC_003324.1 + 14519 0.68 0.618131
Target:  5'- cGGCAGGGCguccgcgaCAAGGCGCuGGCG-CUcaaGGCc -3'
miRNA:   3'- -CUGUUCCG--------GUUCCGCG-UCGUaGA---UCG- -5'
12342 5' -54.2 NC_003324.1 + 32958 0.68 0.629386
Target:  5'- cGugAAGGUCAc-GCGCuGCAUCU-GCu -3'
miRNA:   3'- -CugUUCCGGUucCGCGuCGUAGAuCG- -5'
12342 5' -54.2 NC_003324.1 + 30428 0.7 0.518532
Target:  5'- -uCAAGGCUcugacgGAGGaUGCAGCAUCgcaGGCc -3'
miRNA:   3'- cuGUUCCGG------UUCC-GCGUCGUAGa--UCG- -5'
12342 5' -54.2 NC_003324.1 + 57372 0.7 0.517455
Target:  5'- aGGCGAGGgCGGcacgaccGGCGUugAGCAUCUgAGCg -3'
miRNA:   3'- -CUGUUCCgGUU-------CCGCG--UCGUAGA-UCG- -5'
12342 5' -54.2 NC_003324.1 + 21366 0.7 0.507808
Target:  5'- cGGCGAacgcGGCCGAGaugaaaGCgGCAGCGUCgGGCa -3'
miRNA:   3'- -CUGUU----CCGGUUC------CG-CGUCGUAGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 47983 0.7 0.486651
Target:  5'- gGAUAAgccGGCCAucGGCGCAGCAcgguUC-GGCa -3'
miRNA:   3'- -CUGUU---CCGGUu-CCGCGUCGU----AGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 21212 0.71 0.465921
Target:  5'- uGACGAGGCCGAGaugcuGCGCaAGCG-CcAGCc -3'
miRNA:   3'- -CUGUUCCGGUUC-----CGCG-UCGUaGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 31322 0.71 0.455729
Target:  5'- cGCAGugcGGCCGGcGGCGCuGGCG-CUGGCg -3'
miRNA:   3'- cUGUU---CCGGUU-CCGCG-UCGUaGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 35723 0.71 0.455729
Target:  5'- --gGAGGCCGAGGCcaaacaGCAGCAgaugaugCUGcGCg -3'
miRNA:   3'- cugUUCCGGUUCCG------CGUCGUa------GAU-CG- -5'
12342 5' -54.2 NC_003324.1 + 34155 0.71 0.425898
Target:  5'- gGACAGGGCgGAGcCGCuGGCAUUgGGCg -3'
miRNA:   3'- -CUGUUCCGgUUCcGCG-UCGUAGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 35211 0.72 0.406668
Target:  5'- aGGCGcugAGGUCAAcGGCGaCGGCG-CUGGCg -3'
miRNA:   3'- -CUGU---UCCGGUU-CCGC-GUCGUaGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 21572 0.72 0.39726
Target:  5'- aGCAAcGCgAcGGGCGCGGCAUCcGGCa -3'
miRNA:   3'- cUGUUcCGgU-UCCGCGUCGUAGaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.