miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12342 5' -54.2 NC_003324.1 + 21450 0.69 0.540239
Target:  5'- cGAuCGAGGCUAAGGCcCGGUucAUCcAGCa -3'
miRNA:   3'- -CU-GUUCCGGUUCCGcGUCG--UAGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 21572 0.72 0.39726
Target:  5'- aGCAAcGCgAcGGGCGCGGCAUCcGGCa -3'
miRNA:   3'- cUGUUcCGgU-UCCGCGUCGUAGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 22011 0.67 0.674322
Target:  5'- cGACGAGGCgCAugucGaGCGCAGCcUUgcGCg -3'
miRNA:   3'- -CUGUUCCG-GUu---C-CGCGUCGuAGauCG- -5'
12342 5' -54.2 NC_003324.1 + 22345 0.68 0.618131
Target:  5'- cGACGAcaUCAAGGCGCAGC-UCgccGCg -3'
miRNA:   3'- -CUGUUccGGUUCCGCGUCGuAGau-CG- -5'
12342 5' -54.2 NC_003324.1 + 24176 0.67 0.674322
Target:  5'- cGACAAGGguaucagcgccaCCGuGGCGCAGCGcaccGGCg -3'
miRNA:   3'- -CUGUUCC------------GGUuCCGCGUCGUaga-UCG- -5'
12342 5' -54.2 NC_003324.1 + 26727 0.66 0.717494
Target:  5'- aGCAGGGCgcGGGCcuuuucuGCAGCAUCUuccGUg -3'
miRNA:   3'- cUGUUCCGguUCCG-------CGUCGUAGAu--CG- -5'
12342 5' -54.2 NC_003324.1 + 27783 0.8 0.130657
Target:  5'- cGAUAAGGCCGAGGCGCA-CAUCg--- -3'
miRNA:   3'- -CUGUUCCGGUUCCGCGUcGUAGaucg -5'
12342 5' -54.2 NC_003324.1 + 28412 0.67 0.674322
Target:  5'- uACGAGGCCuacuccCGCAuGCAUgCUGGCa -3'
miRNA:   3'- cUGUUCCGGuucc--GCGU-CGUA-GAUCG- -5'
12342 5' -54.2 NC_003324.1 + 29186 0.67 0.695477
Target:  5'- --gAAGGUUAugccggcAGaGCGCaAGCGUCUGGCu -3'
miRNA:   3'- cugUUCCGGU-------UC-CGCG-UCGUAGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 29467 0.69 0.584483
Target:  5'- uGACAcGGCCGccuggcugcGGGCGCGucgggcGCAUCUcGGUa -3'
miRNA:   3'- -CUGUuCCGGU---------UCCGCGU------CGUAGA-UCG- -5'
12342 5' -54.2 NC_003324.1 + 29647 0.69 0.551208
Target:  5'- cGACGAGGCCuuGAGGCcGCuugagccccguGCAUCUGa- -3'
miRNA:   3'- -CUGUUCCGG--UUCCG-CGu----------CGUAGAUcg -5'
12342 5' -54.2 NC_003324.1 + 30109 0.67 0.68548
Target:  5'- cGGCAuGGGUgGuguugguGGCGCAGCAUCgcGUc -3'
miRNA:   3'- -CUGU-UCCGgUu------CCGCGUCGUAGauCG- -5'
12342 5' -54.2 NC_003324.1 + 30421 0.67 0.68548
Target:  5'- cGAUuGGGCCAGcugcucGCGCGGgAUCUGcGCa -3'
miRNA:   3'- -CUGuUCCGGUUc-----CGCGUCgUAGAU-CG- -5'
12342 5' -54.2 NC_003324.1 + 30428 0.7 0.518532
Target:  5'- -uCAAGGCUcugacgGAGGaUGCAGCAUCgcaGGCc -3'
miRNA:   3'- cuGUUCCGG------UUCC-GCGUCGUAGa--UCG- -5'
12342 5' -54.2 NC_003324.1 + 31322 0.71 0.455729
Target:  5'- cGCAGugcGGCCGGcGGCGCuGGCG-CUGGCg -3'
miRNA:   3'- cUGUU---CCGGUU-CCGCG-UCGUaGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 32168 0.76 0.22154
Target:  5'- cGACGA-GCCGAGGCGCAGCGa--GGCc -3'
miRNA:   3'- -CUGUUcCGGUUCCGCGUCGUagaUCG- -5'
12342 5' -54.2 NC_003324.1 + 32299 0.68 0.605766
Target:  5'- cGACAAcGGCCucugcgcGGCGCcGCAUCUccggauccugcauGGCc -3'
miRNA:   3'- -CUGUU-CCGGuu-----CCGCGuCGUAGA-------------UCG- -5'
12342 5' -54.2 NC_003324.1 + 32958 0.68 0.629386
Target:  5'- cGugAAGGUCAc-GCGCuGCAUCU-GCu -3'
miRNA:   3'- -CugUUCCGGUucCGCGuCGUAGAuCG- -5'
12342 5' -54.2 NC_003324.1 + 34155 0.71 0.425898
Target:  5'- gGACAGGGCgGAGcCGCuGGCAUUgGGCg -3'
miRNA:   3'- -CUGUUCCGgUUCcGCG-UCGUAGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 35211 0.72 0.406668
Target:  5'- aGGCGcugAGGUCAAcGGCGaCGGCG-CUGGCg -3'
miRNA:   3'- -CUGU---UCCGGUU-CCGC-GUCGUaGAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.