miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12342 5' -54.2 NC_003324.1 + 37138 0.66 0.729459
Target:  5'- gGAUucGGCCAAGGU-UGGCGUC-GGCu -3'
miRNA:   3'- -CUGuuCCGGUUCCGcGUCGUAGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 57372 0.7 0.517455
Target:  5'- aGGCGAGGgCGGcacgaccGGCGUugAGCAUCUgAGCg -3'
miRNA:   3'- -CUGUUCCgGUU-------CCGCG--UCGUAGA-UCG- -5'
12342 5' -54.2 NC_003324.1 + 47983 0.7 0.486651
Target:  5'- gGAUAAgccGGCCAucGGCGCAGCAcgguUC-GGCa -3'
miRNA:   3'- -CUGUU---CCGGUu-CCGCGUCGU----AGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 19503 1.02 0.003446
Target:  5'- gGACAAGGCC-AGGCGCAGCAUCUAGCc -3'
miRNA:   3'- -CUGUUCCGGuUCCGCGUCGUAGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 29186 0.67 0.695477
Target:  5'- --gAAGGUUAugccggcAGaGCGCaAGCGUCUGGCu -3'
miRNA:   3'- cugUUCCGGU-------UC-CGCG-UCGUAGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 42279 0.67 0.695477
Target:  5'- aGCGuuGGGCCGAucacuccGGCGCAGUgccGUCguucGGCa -3'
miRNA:   3'- cUGU--UCCGGUU-------CCGCGUCG---UAGa---UCG- -5'
12342 5' -54.2 NC_003324.1 + 30109 0.67 0.68548
Target:  5'- cGGCAuGGGUgGuguugguGGCGCAGCAUCgcGUc -3'
miRNA:   3'- -CUGU-UCCGgUu------CCGCGUCGUAGauCG- -5'
12342 5' -54.2 NC_003324.1 + 24176 0.67 0.674322
Target:  5'- cGACAAGGguaucagcgccaCCGuGGCGCAGCGcaccGGCg -3'
miRNA:   3'- -CUGUUCC------------GGUuCCGCGUCGUaga-UCG- -5'
12342 5' -54.2 NC_003324.1 + 22345 0.68 0.618131
Target:  5'- cGACGAcaUCAAGGCGCAGC-UCgccGCg -3'
miRNA:   3'- -CUGUUccGGUUCCGCGUCGuAGau-CG- -5'
12342 5' -54.2 NC_003324.1 + 30428 0.7 0.518532
Target:  5'- -uCAAGGCUcugacgGAGGaUGCAGCAUCgcaGGCc -3'
miRNA:   3'- cuGUUCCGG------UUCC-GCGUCGUAGa--UCG- -5'
12342 5' -54.2 NC_003324.1 + 18378 0.69 0.540239
Target:  5'- -cCAAGGCCGGGGCaGCGauugcccgcGCGUC-GGCc -3'
miRNA:   3'- cuGUUCCGGUUCCG-CGU---------CGUAGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 45195 0.67 0.667606
Target:  5'- cGGCAGcGGUCGAgagccugaacaagauGGCGCGGUccaaaGUCUGGUg -3'
miRNA:   3'- -CUGUU-CCGGUU---------------CCGCGUCG-----UAGAUCG- -5'
12342 5' -54.2 NC_003324.1 + 21101 0.66 0.728376
Target:  5'- cGACAAGcCCAAggauuucGGCGCGGcCAUCauuGCg -3'
miRNA:   3'- -CUGUUCcGGUU-------CCGCGUC-GUAGau-CG- -5'
12342 5' -54.2 NC_003324.1 + 21450 0.69 0.540239
Target:  5'- cGAuCGAGGCUAAGGCcCGGUucAUCcAGCa -3'
miRNA:   3'- -CU-GUUCCGGUUCCGcGUCG--UAGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 57171 0.66 0.718587
Target:  5'- uGCGAGGgCGAGGC-CAGCcUUgcGCa -3'
miRNA:   3'- cUGUUCCgGUUCCGcGUCGuAGauCG- -5'
12342 5' -54.2 NC_003324.1 + 28412 0.67 0.674322
Target:  5'- uACGAGGCCuacuccCGCAuGCAUgCUGGCa -3'
miRNA:   3'- cUGUUCCGGuucc--GCGU-CGUA-GAUCG- -5'
12342 5' -54.2 NC_003324.1 + 48406 0.69 0.540239
Target:  5'- aGACAAGaGCCAcccccucGCGCAGCuUCUuGCg -3'
miRNA:   3'- -CUGUUC-CGGUuc-----CGCGUCGuAGAuCG- -5'
12342 5' -54.2 NC_003324.1 + 21366 0.7 0.507808
Target:  5'- cGGCGAacgcGGCCGAGaugaaaGCgGCAGCGUCgGGCa -3'
miRNA:   3'- -CUGUU----CCGGUUC------CG-CGUCGUAGaUCG- -5'
12342 5' -54.2 NC_003324.1 + 5983 0.66 0.707624
Target:  5'- cGACugucGGGCCAucaAGGCGCAGgcCGUCa--- -3'
miRNA:   3'- -CUGu---UCCGGU---UCCGCGUC--GUAGaucg -5'
12342 5' -54.2 NC_003324.1 + 10705 0.67 0.68548
Target:  5'- cGACAcGGaGCCAcGGC-CAGCGUUgGGCg -3'
miRNA:   3'- -CUGU-UC-CGGUuCCGcGUCGUAGaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.