Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12345 | 5' | -61.5 | NC_003324.1 | + | 8482 | 0.66 | 0.415516 |
Target: 5'- ---cGCcCCGaUGGUGGCCGgagCUGAUCg -3' miRNA: 3'- gcuaCGcGGC-ACCGCCGGCa--GGCUGG- -5' |
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12345 | 5' | -61.5 | NC_003324.1 | + | 12123 | 0.72 | 0.20054 |
Target: 5'- gCGcUGCGUCGUGaUGGaCCGUCCGcCCg -3' miRNA: 3'- -GCuACGCGGCACcGCC-GGCAGGCuGG- -5' |
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12345 | 5' | -61.5 | NC_003324.1 | + | 13066 | 0.66 | 0.470675 |
Target: 5'- aCGAuuUGCaGCCGguaccGCcGCCG-CCGACCg -3' miRNA: 3'- -GCU--ACG-CGGCac---CGcCGGCaGGCUGG- -5' |
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12345 | 5' | -61.5 | NC_003324.1 | + | 13173 | 0.68 | 0.331455 |
Target: 5'- gCGAggcUGCGUCGgcggcggucggcGGCGGCgGUaCCGGCUg -3' miRNA: 3'- -GCU---ACGCGGCa-----------CCGCCGgCA-GGCUGG- -5' |
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12345 | 5' | -61.5 | NC_003324.1 | + | 14600 | 0.73 | 0.151316 |
Target: 5'- gGcgGCGCaggcgguagCGUGGCGGCCGgagcuaCGGCCc -3' miRNA: 3'- gCuaCGCG---------GCACCGCCGGCag----GCUGG- -5' |
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12345 | 5' | -61.5 | NC_003324.1 | + | 16214 | 0.66 | 0.415516 |
Target: 5'- uCGAUaccGCGaCGgGGCaGGCCGUgCCGACg -3' miRNA: 3'- -GCUA---CGCgGCaCCG-CCGGCA-GGCUGg -5' |
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12345 | 5' | -61.5 | NC_003324.1 | + | 16899 | 0.66 | 0.415516 |
Target: 5'- -uGUGCGCCGauuugcaaggUGGCGGCUG-CCaGCg -3' miRNA: 3'- gcUACGCGGC----------ACCGCCGGCaGGcUGg -5' |
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12345 | 5' | -61.5 | NC_003324.1 | + | 20590 | 0.66 | 0.451862 |
Target: 5'- gGAUccgGUGCUGUGGC-GCCGUC--GCCa -3' miRNA: 3'- gCUA---CGCGGCACCGcCGGCAGgcUGG- -5' |
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12345 | 5' | -61.5 | NC_003324.1 | + | 21157 | 0.68 | 0.325417 |
Target: 5'- ---cGCGCCGcGGCGGCCGacaaGGCa -3' miRNA: 3'- gcuaCGCGGCaCCGCCGGCagg-CUGg -5' |
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12345 | 5' | -61.5 | NC_003324.1 | + | 21602 | 1.1 | 0.000263 |
Target: 5'- uCGAUGCGCCGUGGCGGCCGUCCGACCu -3' miRNA: 3'- -GCUACGCGGCACCGCCGGCAGGCUGG- -5' |
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12345 | 5' | -61.5 | NC_003324.1 | + | 23119 | 0.66 | 0.4584 |
Target: 5'- cCGAUGCgucgcuuuuccaucGCCGaugcaaUGGCGGCaaaCGUCUuGCCg -3' miRNA: 3'- -GCUACG--------------CGGC------ACCGCCG---GCAGGcUGG- -5' |
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12345 | 5' | -61.5 | NC_003324.1 | + | 23752 | 0.72 | 0.20257 |
Target: 5'- gCGAcguUGCGCCGgaaaucgggguccgaUucGGCGGCgCGUUCGGCCu -3' miRNA: 3'- -GCU---ACGCGGC---------------A--CCGCCG-GCAGGCUGG- -5' |
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12345 | 5' | -61.5 | NC_003324.1 | + | 23992 | 0.67 | 0.3645 |
Target: 5'- uCGAcGCGCUGguagGGCGGCgGUagGGCUg -3' miRNA: 3'- -GCUaCGCGGCa---CCGCCGgCAggCUGG- -5' |
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12345 | 5' | -61.5 | NC_003324.1 | + | 24832 | 0.7 | 0.250664 |
Target: 5'- gGAUcGCGCCGacaaGGuCGGCCGUCUuGGCa -3' miRNA: 3'- gCUA-CGCGGCa---CC-GCCGGCAGG-CUGg -5' |
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12345 | 5' | -61.5 | NC_003324.1 | + | 25851 | 0.66 | 0.461218 |
Target: 5'- gGAUGCgGCgCGUGGUGGagCGaUCgCGAUCg -3' miRNA: 3'- gCUACG-CG-GCACCGCCg-GC-AG-GCUGG- -5' |
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12345 | 5' | -61.5 | NC_003324.1 | + | 29226 | 0.73 | 0.159366 |
Target: 5'- aCGGUGCGCUcaccaagacGGCGGCUGUUCgGGCCu -3' miRNA: 3'- -GCUACGCGGca-------CCGCCGGCAGG-CUGG- -5' |
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12345 | 5' | -61.5 | NC_003324.1 | + | 31621 | 0.71 | 0.210867 |
Target: 5'- gCGG-GCGCgCGUGGCGGCCauucUCaCGACg -3' miRNA: 3'- -GCUaCGCG-GCACCGCCGGc---AG-GCUGg -5' |
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12345 | 5' | -61.5 | NC_003324.1 | + | 32470 | 0.67 | 0.389461 |
Target: 5'- ---cGCGCCGaGGUGGUgcgagaGcCCGACCa -3' miRNA: 3'- gcuaCGCGGCaCCGCCGg-----CaGGCUGG- -5' |
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12345 | 5' | -61.5 | NC_003324.1 | + | 33928 | 0.66 | 0.412862 |
Target: 5'- uCGAUGUggaccucuacgauuGCCGcgaGGCGGCCGUgCaaGCCg -3' miRNA: 3'- -GCUACG--------------CGGCa--CCGCCGGCAgGc-UGG- -5' |
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12345 | 5' | -61.5 | NC_003324.1 | + | 35923 | 0.66 | 0.461218 |
Target: 5'- aCGAUGCGUucuCG-GGCaGCCcGUCguUGACCg -3' miRNA: 3'- -GCUACGCG---GCaCCGcCGG-CAG--GCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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