miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12345 5' -61.5 NC_003324.1 + 20590 0.66 0.451862
Target:  5'- gGAUccgGUGCUGUGGC-GCCGUC--GCCa -3'
miRNA:   3'- gCUA---CGCGGCACCGcCGGCAGgcUGG- -5'
12345 5' -61.5 NC_003324.1 + 16899 0.66 0.415516
Target:  5'- -uGUGCGCCGauuugcaaggUGGCGGCUG-CCaGCg -3'
miRNA:   3'- gcUACGCGGC----------ACCGCCGGCaGGcUGg -5'
12345 5' -61.5 NC_003324.1 + 16214 0.66 0.415516
Target:  5'- uCGAUaccGCGaCGgGGCaGGCCGUgCCGACg -3'
miRNA:   3'- -GCUA---CGCgGCaCCG-CCGGCA-GGCUGg -5'
12345 5' -61.5 NC_003324.1 + 14600 0.73 0.151316
Target:  5'- gGcgGCGCaggcgguagCGUGGCGGCCGgagcuaCGGCCc -3'
miRNA:   3'- gCuaCGCG---------GCACCGCCGGCag----GCUGG- -5'
12345 5' -61.5 NC_003324.1 + 13173 0.68 0.331455
Target:  5'- gCGAggcUGCGUCGgcggcggucggcGGCGGCgGUaCCGGCUg -3'
miRNA:   3'- -GCU---ACGCGGCa-----------CCGCCGgCA-GGCUGG- -5'
12345 5' -61.5 NC_003324.1 + 13066 0.66 0.470675
Target:  5'- aCGAuuUGCaGCCGguaccGCcGCCG-CCGACCg -3'
miRNA:   3'- -GCU--ACG-CGGCac---CGcCGGCaGGCUGG- -5'
12345 5' -61.5 NC_003324.1 + 12123 0.72 0.20054
Target:  5'- gCGcUGCGUCGUGaUGGaCCGUCCGcCCg -3'
miRNA:   3'- -GCuACGCGGCACcGCC-GGCAGGCuGG- -5'
12345 5' -61.5 NC_003324.1 + 8482 0.66 0.415516
Target:  5'- ---cGCcCCGaUGGUGGCCGgagCUGAUCg -3'
miRNA:   3'- gcuaCGcGGC-ACCGCCGGCa--GGCUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.