Results 21 - 40 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 33608 | 0.68 | 0.432433 |
Target: 5'- cGCAgCGCGuuGCCGACGGcGAUGaGaaaCUu -3' miRNA: 3'- -CGUaGCGCggCGGCUGCU-CUAC-Cg--GG- -5' |
|||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 31654 | 0.66 | 0.519869 |
Target: 5'- gGCG-CGCcggagaaguuGCCGCCGuuccaucCGAGAUcGGCCg -3' miRNA: 3'- -CGUaGCG----------CGGCGGCu------GCUCUA-CCGGg -5' |
|||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 30515 | 0.73 | 0.223681 |
Target: 5'- cGCAUUGCGCagaucCCGcGCGAGcagcUGGCCCa -3' miRNA: 3'- -CGUAGCGCGgc---GGC-UGCUCu---ACCGGG- -5' |
|||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 30480 | 0.67 | 0.480026 |
Target: 5'- -aAUCgGCGCCGCCGAgca---GGCCCu -3' miRNA: 3'- cgUAG-CGCGGCGGCUgcucuaCCGGG- -5' |
|||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 30138 | 0.72 | 0.24119 |
Target: 5'- gGUGUCGCGaCCGgCGGCGuGAUGGgCg -3' miRNA: 3'- -CGUAGCGC-GGCgGCUGCuCUACCgGg -5' |
|||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 30085 | 0.72 | 0.247275 |
Target: 5'- aGCAUCGCGUCGCCaGAgugcaccggcCGGGAUcgaugcGGaCCCg -3' miRNA: 3'- -CGUAGCGCGGCGG-CU----------GCUCUA------CC-GGG- -5' |
|||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 30057 | 0.66 | 0.540275 |
Target: 5'- cCAUCaCGCCGCCGGuCGcGAcaccGGCCg -3' miRNA: 3'- cGUAGcGCGGCGGCU-GCuCUa---CCGGg -5' |
|||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 29643 | 0.66 | 0.540275 |
Target: 5'- cGCAaCGcCGCCGCCuGAgcCGGGAUcGaGUCCg -3' miRNA: 3'- -CGUaGC-GCGGCGG-CU--GCUCUA-C-CGGG- -5' |
|||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 29454 | 0.66 | 0.530036 |
Target: 5'- cCGUUGuCGUCaCCGACGAGGgcaaGCCCu -3' miRNA: 3'- cGUAGC-GCGGcGGCUGCUCUac--CGGG- -5' |
|||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 27984 | 0.68 | 0.441735 |
Target: 5'- cGCA-CGUgGCCGCuuCGACGAGcacaagguaAUGGCCg -3' miRNA: 3'- -CGUaGCG-CGGCG--GCUGCUC---------UACCGGg -5' |
|||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 24360 | 0.68 | 0.432433 |
Target: 5'- aGC-UC-CGCCGUgcccagauCGACGAGAaGGCCUc -3' miRNA: 3'- -CGuAGcGCGGCG--------GCUGCUCUaCCGGG- -5' |
|||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 22897 | 0.7 | 0.322766 |
Target: 5'- uGCGUCGUGCCaCgGGCGAGAaaaGCCg -3' miRNA: 3'- -CGUAGCGCGGcGgCUGCUCUac-CGGg -5' |
|||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 22156 | 0.68 | 0.441735 |
Target: 5'- cGCcUCGCcgaCGCCGAUGuAGGaGGCCUg -3' miRNA: 3'- -CGuAGCGcg-GCGGCUGC-UCUaCCGGG- -5' |
|||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 22034 | 1.13 | 0.000241 |
Target: 5'- uGCAUCGCGCCGCCGACGAGAUGGCCCg -3' miRNA: 3'- -CGUAGCGCGGCGGCUGCUCUACCGGG- -5' |
|||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 21397 | 0.66 | 0.526978 |
Target: 5'- ---aCGCGCgaaaucgaggauauCGCCGGCGAGgcGGCg- -3' miRNA: 3'- cguaGCGCG--------------GCGGCUGCUCuaCCGgg -5' |
|||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 20006 | 0.66 | 0.550581 |
Target: 5'- cCAUCagccagGUGuuGCUGugGAGcuccGUGGCCUg -3' miRNA: 3'- cGUAG------CGCggCGGCugCUC----UACCGGG- -5' |
|||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 19397 | 0.76 | 0.140058 |
Target: 5'- cGCGUCGCGCCGUgcAUGAGGUcGGCUa -3' miRNA: 3'- -CGUAGCGCGGCGgcUGCUCUA-CCGGg -5' |
|||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 19117 | 0.68 | 0.41418 |
Target: 5'- gGCAUUGCGCuUGUCGAUcccGGUcaGGCCCg -3' miRNA: 3'- -CGUAGCGCG-GCGGCUGcu-CUA--CCGGG- -5' |
|||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 18690 | 0.75 | 0.143835 |
Target: 5'- uCGUCGCacauguuccacGCCGCCcACcAGAUGGCCCg -3' miRNA: 3'- cGUAGCG-----------CGGCGGcUGcUCUACCGGG- -5' |
|||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 18267 | 0.66 | 0.509779 |
Target: 5'- ---cCGCGaCCGCUGACGGaAUcGGCCg -3' miRNA: 3'- cguaGCGC-GGCGGCUGCUcUA-CCGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home