miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12346 5' -59.3 NC_003324.1 + 22897 0.7 0.322766
Target:  5'- uGCGUCGUGCCaCgGGCGAGAaaaGCCg -3'
miRNA:   3'- -CGUAGCGCGGcGgCUGCUCUac-CGGg -5'
12346 5' -59.3 NC_003324.1 + 24360 0.68 0.432433
Target:  5'- aGC-UC-CGCCGUgcccagauCGACGAGAaGGCCUc -3'
miRNA:   3'- -CGuAGcGCGGCG--------GCUGCUCUaCCGGG- -5'
12346 5' -59.3 NC_003324.1 + 27984 0.68 0.441735
Target:  5'- cGCA-CGUgGCCGCuuCGACGAGcacaagguaAUGGCCg -3'
miRNA:   3'- -CGUaGCG-CGGCG--GCUGCUC---------UACCGGg -5'
12346 5' -59.3 NC_003324.1 + 29454 0.66 0.530036
Target:  5'- cCGUUGuCGUCaCCGACGAGGgcaaGCCCu -3'
miRNA:   3'- cGUAGC-GCGGcGGCUGCUCUac--CGGG- -5'
12346 5' -59.3 NC_003324.1 + 29643 0.66 0.540275
Target:  5'- cGCAaCGcCGCCGCCuGAgcCGGGAUcGaGUCCg -3'
miRNA:   3'- -CGUaGC-GCGGCGG-CU--GCUCUA-C-CGGG- -5'
12346 5' -59.3 NC_003324.1 + 30057 0.66 0.540275
Target:  5'- cCAUCaCGCCGCCGGuCGcGAcaccGGCCg -3'
miRNA:   3'- cGUAGcGCGGCGGCU-GCuCUa---CCGGg -5'
12346 5' -59.3 NC_003324.1 + 30085 0.72 0.247275
Target:  5'- aGCAUCGCGUCGCCaGAgugcaccggcCGGGAUcgaugcGGaCCCg -3'
miRNA:   3'- -CGUAGCGCGGCGG-CU----------GCUCUA------CC-GGG- -5'
12346 5' -59.3 NC_003324.1 + 30138 0.72 0.24119
Target:  5'- gGUGUCGCGaCCGgCGGCGuGAUGGgCg -3'
miRNA:   3'- -CGUAGCGC-GGCgGCUGCuCUACCgGg -5'
12346 5' -59.3 NC_003324.1 + 30480 0.67 0.480026
Target:  5'- -aAUCgGCGCCGCCGAgca---GGCCCu -3'
miRNA:   3'- cgUAG-CGCGGCGGCUgcucuaCCGGG- -5'
12346 5' -59.3 NC_003324.1 + 30515 0.73 0.223681
Target:  5'- cGCAUUGCGCagaucCCGcGCGAGcagcUGGCCCa -3'
miRNA:   3'- -CGUAGCGCGgc---GGC-UGCUCu---ACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 31654 0.66 0.519869
Target:  5'- gGCG-CGCcggagaaguuGCCGCCGuuccaucCGAGAUcGGCCg -3'
miRNA:   3'- -CGUaGCG----------CGGCGGCu------GCUCUA-CCGGg -5'
12346 5' -59.3 NC_003324.1 + 33608 0.68 0.432433
Target:  5'- cGCAgCGCGuuGCCGACGGcGAUGaGaaaCUu -3'
miRNA:   3'- -CGUaGCGCggCGGCUGCU-CUAC-Cg--GG- -5'
12346 5' -59.3 NC_003324.1 + 36653 0.68 0.41418
Target:  5'- gGCgAagGUGCCGCCGgagauGCGAGAUGucuuGUCCg -3'
miRNA:   3'- -CG-UagCGCGGCGGC-----UGCUCUAC----CGGG- -5'
12346 5' -59.3 NC_003324.1 + 38930 0.66 0.519869
Target:  5'- uGCAuuUCGCGagcuggugggaCGCCGACGAauacgccAUGGaCCCg -3'
miRNA:   3'- -CGU--AGCGCg----------GCGGCUGCUc------UACC-GGG- -5'
12346 5' -59.3 NC_003324.1 + 39831 0.7 0.325813
Target:  5'- aGCA-CGUGCCGCCGGacaccaaggccgccaUGuGGUGGCUg -3'
miRNA:   3'- -CGUaGCGCGGCGGCU---------------GCuCUACCGGg -5'
12346 5' -59.3 NC_003324.1 + 39988 0.7 0.338212
Target:  5'- cCGUCGCGCCGagcgUGGCGAGGguguUGGCg- -3'
miRNA:   3'- cGUAGCGCGGCg---GCUGCUCU----ACCGgg -5'
12346 5' -59.3 NC_003324.1 + 40702 0.7 0.300596
Target:  5'- aGgAUCGCcCUGauCCGGCG-GAUGGCCCc -3'
miRNA:   3'- -CgUAGCGcGGC--GGCUGCuCUACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 41728 0.91 0.011279
Target:  5'- aCGUCGCGCCGCCGACGAGAgcgGGCgagCCg -3'
miRNA:   3'- cGUAGCGCGGCGGCUGCUCUa--CCG---GG- -5'
12346 5' -59.3 NC_003324.1 + 42126 0.67 0.483946
Target:  5'- uCGUCGCcaauGCCGCCG-CGGGGaucagcaacagaccaUGGgCCg -3'
miRNA:   3'- cGUAGCG----CGGCGGCuGCUCU---------------ACCgGG- -5'
12346 5' -59.3 NC_003324.1 + 42786 0.67 0.488866
Target:  5'- cGCAUCGUccgaugggaugauGCCucGCCaGCGGuugccgguccuGGUGGCCCg -3'
miRNA:   3'- -CGUAGCG-------------CGG--CGGcUGCU-----------CUACCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.