miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12346 5' -59.3 NC_003324.1 + 1503 0.82 0.052179
Target:  5'- uGCGUCGCGCUGCuCGACGAGGcgaagaacGCCCa -3'
miRNA:   3'- -CGUAGCGCGGCG-GCUGCUCUac------CGGG- -5'
12346 5' -59.3 NC_003324.1 + 1605 0.66 0.538222
Target:  5'- cGCcgCGCaccacuGCCGCCGGauccucgcUGGCCCg -3'
miRNA:   3'- -CGuaGCG------CGGCGGCUgcucu---ACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 3176 0.67 0.474177
Target:  5'- gGCAcCGCGCCGaugaaugggauugcuUUGAUGAGuggcaGGCCCu -3'
miRNA:   3'- -CGUaGCGCGGC---------------GGCUGCUCua---CCGGG- -5'
12346 5' -59.3 NC_003324.1 + 4531 0.67 0.470298
Target:  5'- -gAUCGaCGCCaCCGACaAGAUGaGCCg -3'
miRNA:   3'- cgUAGC-GCGGcGGCUGcUCUAC-CGGg -5'
12346 5' -59.3 NC_003324.1 + 4575 0.67 0.46067
Target:  5'- -aGUCGCGUCGCCGcCGuagaGGAUGugaGCCg -3'
miRNA:   3'- cgUAGCGCGGCGGCuGC----UCUAC---CGGg -5'
12346 5' -59.3 NC_003324.1 + 8268 0.78 0.098619
Target:  5'- gGCG-CGCGCCGCCGGgcagugagcaGGGAcUGGCCCu -3'
miRNA:   3'- -CGUaGCGCGGCGGCUg---------CUCU-ACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 8970 0.68 0.405233
Target:  5'- ---cCGC-CCGCUGugGGGAauuUGGCCg -3'
miRNA:   3'- cguaGCGcGGCGGCugCUCU---ACCGGg -5'
12346 5' -59.3 NC_003324.1 + 9008 0.68 0.405233
Target:  5'- ---cCGCGCUGUCGACGAGGgucagcGGaaaCCa -3'
miRNA:   3'- cguaGCGCGGCGGCUGCUCUa-----CCg--GG- -5'
12346 5' -59.3 NC_003324.1 + 9723 0.79 0.083666
Target:  5'- cGCGUUgGCGuuGCCGGCGGuguUGGCCCa -3'
miRNA:   3'- -CGUAG-CGCggCGGCUGCUcu-ACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 10643 0.67 0.451148
Target:  5'- cGUGUCGCuaCGaCUGGCGAGAccaUGGUCa -3'
miRNA:   3'- -CGUAGCGcgGC-GGCUGCUCU---ACCGGg -5'
12346 5' -59.3 NC_003324.1 + 15057 0.66 0.560945
Target:  5'- ---cUGCGCauagguGCCGACGuGAUG-CCCg -3'
miRNA:   3'- cguaGCGCGg-----CGGCUGCuCUACcGGG- -5'
12346 5' -59.3 NC_003324.1 + 17605 0.68 0.396408
Target:  5'- uGCcccggCGCGCCGuuGAgcacgaugccgcCGAGcucgGGCCCg -3'
miRNA:   3'- -CGua---GCGCGGCggCU------------GCUCua--CCGGG- -5'
12346 5' -59.3 NC_003324.1 + 18267 0.66 0.509779
Target:  5'- ---cCGCGaCCGCUGACGGaAUcGGCCg -3'
miRNA:   3'- cguaGCGC-GGCGGCUGCUcUA-CCGGg -5'
12346 5' -59.3 NC_003324.1 + 18690 0.75 0.143835
Target:  5'- uCGUCGCacauguuccacGCCGCCcACcAGAUGGCCCg -3'
miRNA:   3'- cGUAGCG-----------CGGCGGcUGcUCUACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 19117 0.68 0.41418
Target:  5'- gGCAUUGCGCuUGUCGAUcccGGUcaGGCCCg -3'
miRNA:   3'- -CGUAGCGCG-GCGGCUGcu-CUA--CCGGG- -5'
12346 5' -59.3 NC_003324.1 + 19397 0.76 0.140058
Target:  5'- cGCGUCGCGCCGUgcAUGAGGUcGGCUa -3'
miRNA:   3'- -CGUAGCGCGGCGgcUGCUCUA-CCGGg -5'
12346 5' -59.3 NC_003324.1 + 20006 0.66 0.550581
Target:  5'- cCAUCagccagGUGuuGCUGugGAGcuccGUGGCCUg -3'
miRNA:   3'- cGUAG------CGCggCGGCugCUC----UACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 21397 0.66 0.526978
Target:  5'- ---aCGCGCgaaaucgaggauauCGCCGGCGAGgcGGCg- -3'
miRNA:   3'- cguaGCGCG--------------GCGGCUGCUCuaCCGgg -5'
12346 5' -59.3 NC_003324.1 + 22034 1.13 0.000241
Target:  5'- uGCAUCGCGCCGCCGACGAGAUGGCCCg -3'
miRNA:   3'- -CGUAGCGCGGCGGCUGCUCUACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 22156 0.68 0.441735
Target:  5'- cGCcUCGCcgaCGCCGAUGuAGGaGGCCUg -3'
miRNA:   3'- -CGuAGCGcg-GCGGCUGC-UCUaCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.