Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 22034 | 1.13 | 0.000241 |
Target: 5'- uGCAUCGCGCCGCCGACGAGAUGGCCCg -3' miRNA: 3'- -CGUAGCGCGGCGGCUGCUCUACCGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 41728 | 0.91 | 0.011279 |
Target: 5'- aCGUCGCGCCGCCGACGAGAgcgGGCgagCCg -3' miRNA: 3'- cGUAGCGCGGCGGCUGCUCUa--CCG---GG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 1503 | 0.82 | 0.052179 |
Target: 5'- uGCGUCGCGCUGCuCGACGAGGcgaagaacGCCCa -3' miRNA: 3'- -CGUAGCGCGGCG-GCUGCUCUac------CGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 9723 | 0.79 | 0.083666 |
Target: 5'- cGCGUUgGCGuuGCCGGCGGuguUGGCCCa -3' miRNA: 3'- -CGUAG-CGCggCGGCUGCUcu-ACCGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 8268 | 0.78 | 0.098619 |
Target: 5'- gGCG-CGCGCCGCCGGgcagugagcaGGGAcUGGCCCu -3' miRNA: 3'- -CGUaGCGCGGCGGCUg---------CUCU-ACCGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 19397 | 0.76 | 0.140058 |
Target: 5'- cGCGUCGCGCCGUgcAUGAGGUcGGCUa -3' miRNA: 3'- -CGUAGCGCGGCGgcUGCUCUA-CCGGg -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 18690 | 0.75 | 0.143835 |
Target: 5'- uCGUCGCacauguuccacGCCGCCcACcAGAUGGCCCg -3' miRNA: 3'- cGUAGCG-----------CGGCGGcUGcUCUACCGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 30515 | 0.73 | 0.223681 |
Target: 5'- cGCAUUGCGCagaucCCGcGCGAGcagcUGGCCCa -3' miRNA: 3'- -CGUAGCGCGgc---GGC-UGCUCu---ACCGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 30138 | 0.72 | 0.24119 |
Target: 5'- gGUGUCGCGaCCGgCGGCGuGAUGGgCg -3' miRNA: 3'- -CGUAGCGC-GGCgGCUGCuCUACCgGg -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 30085 | 0.72 | 0.247275 |
Target: 5'- aGCAUCGCGUCGCCaGAgugcaccggcCGGGAUcgaugcGGaCCCg -3' miRNA: 3'- -CGUAGCGCGGCGG-CU----------GCUCUA------CC-GGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 48310 | 0.72 | 0.259826 |
Target: 5'- gGCAuUCGCaagaaGCUGCgCGAgGGGGUGGCUCu -3' miRNA: 3'- -CGU-AGCG-----CGGCG-GCUgCUCUACCGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 44587 | 0.71 | 0.266294 |
Target: 5'- cGCAUgcgCGUGCCGuCCGAuCGGGAaaugagGGUCCg -3' miRNA: 3'- -CGUA---GCGCGGC-GGCU-GCUCUa-----CCGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 47733 | 0.7 | 0.300596 |
Target: 5'- cGCAccggCGUGCCacaGCuCGACGAuGgcGGCCCg -3' miRNA: 3'- -CGUa---GCGCGG---CG-GCUGCU-CuaCCGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 40702 | 0.7 | 0.300596 |
Target: 5'- aGgAUCGCcCUGauCCGGCG-GAUGGCCCc -3' miRNA: 3'- -CgUAGCGcGGC--GGCUGCuCUACCGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 49716 | 0.7 | 0.315243 |
Target: 5'- uUAUCcCGCUGCCcugcaGGCGGGAUGGUUCa -3' miRNA: 3'- cGUAGcGCGGCGG-----CUGCUCUACCGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 22897 | 0.7 | 0.322766 |
Target: 5'- uGCGUCGUGCCaCgGGCGAGAaaaGCCg -3' miRNA: 3'- -CGUAGCGCGGcGgCUGCUCUac-CGGg -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 39831 | 0.7 | 0.325813 |
Target: 5'- aGCA-CGUGCCGCCGGacaccaaggccgccaUGuGGUGGCUg -3' miRNA: 3'- -CGUaGCGCGGCGGCU---------------GCuCUACCGGg -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 39988 | 0.7 | 0.338212 |
Target: 5'- cCGUCGCGCCGagcgUGGCGAGGguguUGGCg- -3' miRNA: 3'- cGUAGCGCGGCg---GCUGCUCU----ACCGgg -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 54302 | 0.69 | 0.346134 |
Target: 5'- uGCGUCuGCGCCGucugcacguCCGugGuGAuaucUGGCUCg -3' miRNA: 3'- -CGUAG-CGCGGC---------GGCugCuCU----ACCGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 50859 | 0.68 | 0.396408 |
Target: 5'- aGCAUUGCcgucGCCGUCGACGAaaaacuccGGCUCu -3' miRNA: 3'- -CGUAGCG----CGGCGGCUGCUcua-----CCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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