miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12346 5' -59.3 NC_003324.1 + 29643 0.66 0.540275
Target:  5'- cGCAaCGcCGCCGCCuGAgcCGGGAUcGaGUCCg -3'
miRNA:   3'- -CGUaGC-GCGGCGG-CU--GCUCUA-C-CGGG- -5'
12346 5' -59.3 NC_003324.1 + 4531 0.67 0.470298
Target:  5'- -gAUCGaCGCCaCCGACaAGAUGaGCCg -3'
miRNA:   3'- cgUAGC-GCGGcGGCUGcUCUAC-CGGg -5'
12346 5' -59.3 NC_003324.1 + 3176 0.67 0.474177
Target:  5'- gGCAcCGCGCCGaugaaugggauugcuUUGAUGAGuggcaGGCCCu -3'
miRNA:   3'- -CGUaGCGCGGC---------------GGCUGCUCua---CCGGG- -5'
12346 5' -59.3 NC_003324.1 + 30480 0.67 0.480026
Target:  5'- -aAUCgGCGCCGCCGAgca---GGCCCu -3'
miRNA:   3'- cgUAG-CGCGGCGGCUgcucuaCCGGG- -5'
12346 5' -59.3 NC_003324.1 + 42126 0.67 0.483946
Target:  5'- uCGUCGCcaauGCCGCCG-CGGGGaucagcaacagaccaUGGgCCg -3'
miRNA:   3'- cGUAGCG----CGGCGGCuGCUCU---------------ACCgGG- -5'
12346 5' -59.3 NC_003324.1 + 54135 0.67 0.489853
Target:  5'- gGCGccUGCGCauugGCuCGACGGGAgcUGGCCg -3'
miRNA:   3'- -CGUa-GCGCGg---CG-GCUGCUCU--ACCGGg -5'
12346 5' -59.3 NC_003324.1 + 50446 0.66 0.506768
Target:  5'- uGCAgcUCGCaggGCUGCgCGAUccggagggcgaagaGuGAUGGCCCa -3'
miRNA:   3'- -CGU--AGCG---CGGCG-GCUG--------------CuCUACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 18267 0.66 0.509779
Target:  5'- ---cCGCGaCCGCUGACGGaAUcGGCCg -3'
miRNA:   3'- cguaGCGC-GGCGGCUGCUcUA-CCGGg -5'
12346 5' -59.3 NC_003324.1 + 31654 0.66 0.519869
Target:  5'- gGCG-CGCcggagaaguuGCCGCCGuuccaucCGAGAUcGGCCg -3'
miRNA:   3'- -CGUaGCG----------CGGCGGCu------GCUCUA-CCGGg -5'
12346 5' -59.3 NC_003324.1 + 10643 0.67 0.451148
Target:  5'- cGUGUCGCuaCGaCUGGCGAGAccaUGGUCa -3'
miRNA:   3'- -CGUAGCGcgGC-GGCUGCUCU---ACCGGg -5'
12346 5' -59.3 NC_003324.1 + 22156 0.68 0.441735
Target:  5'- cGCcUCGCcgaCGCCGAUGuAGGaGGCCUg -3'
miRNA:   3'- -CGuAGCGcg-GCGGCUGC-UCUaCCGGG- -5'
12346 5' -59.3 NC_003324.1 + 33608 0.68 0.432433
Target:  5'- cGCAgCGCGuuGCCGACGGcGAUGaGaaaCUu -3'
miRNA:   3'- -CGUaGCGCggCGGCUGCU-CUAC-Cg--GG- -5'
12346 5' -59.3 NC_003324.1 + 48310 0.72 0.259826
Target:  5'- gGCAuUCGCaagaaGCUGCgCGAgGGGGUGGCUCu -3'
miRNA:   3'- -CGU-AGCG-----CGGCG-GCUgCUCUACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 49716 0.7 0.315243
Target:  5'- uUAUCcCGCUGCCcugcaGGCGGGAUGGUUCa -3'
miRNA:   3'- cGUAGcGCGGCGG-----CUGCUCUACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 39988 0.7 0.338212
Target:  5'- cCGUCGCGCCGagcgUGGCGAGGguguUGGCg- -3'
miRNA:   3'- cGUAGCGCGGCg---GCUGCUCU----ACCGgg -5'
12346 5' -59.3 NC_003324.1 + 54302 0.69 0.346134
Target:  5'- uGCGUCuGCGCCGucugcacguCCGugGuGAuaucUGGCUCg -3'
miRNA:   3'- -CGUAG-CGCGGC---------GGCugCuCU----ACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 17605 0.68 0.396408
Target:  5'- uGCcccggCGCGCCGuuGAgcacgaugccgcCGAGcucgGGCCCg -3'
miRNA:   3'- -CGua---GCGCGGCggCU------------GCUCua--CCGGG- -5'
12346 5' -59.3 NC_003324.1 + 50997 0.68 0.396408
Target:  5'- aGCcUCGacgagGCUcggacgaagGCCGACGAaAUGGCCCa -3'
miRNA:   3'- -CGuAGCg----CGG---------CGGCUGCUcUACCGGG- -5'
12346 5' -59.3 NC_003324.1 + 36653 0.68 0.41418
Target:  5'- gGCgAagGUGCCGCCGgagauGCGAGAUGucuuGUCCg -3'
miRNA:   3'- -CG-UagCGCGGCGGC-----UGCUCUAC----CGGG- -5'
12346 5' -59.3 NC_003324.1 + 19117 0.68 0.41418
Target:  5'- gGCAUUGCGCuUGUCGAUcccGGUcaGGCCCg -3'
miRNA:   3'- -CGUAGCGCG-GCGGCUGcu-CUA--CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.