Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12346 | 5' | -59.3 | NC_003324.1 | + | 15057 | 0.66 | 0.560945 |
Target: 5'- ---cUGCGCauagguGCCGACGuGAUG-CCCg -3' miRNA: 3'- cguaGCGCGg-----CGGCUGCuCUACcGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 47733 | 0.7 | 0.300596 |
Target: 5'- cGCAccggCGUGCCacaGCuCGACGAuGgcGGCCCg -3' miRNA: 3'- -CGUa---GCGCGG---CG-GCUGCU-CuaCCGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 44587 | 0.71 | 0.266294 |
Target: 5'- cGCAUgcgCGUGCCGuCCGAuCGGGAaaugagGGUCCg -3' miRNA: 3'- -CGUA---GCGCGGC-GGCU-GCUCUa-----CCGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 22034 | 1.13 | 0.000241 |
Target: 5'- uGCAUCGCGCCGCCGACGAGAUGGCCCg -3' miRNA: 3'- -CGUAGCGCGGCGGCUGCUCUACCGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 21397 | 0.66 | 0.526978 |
Target: 5'- ---aCGCGCgaaaucgaggauauCGCCGGCGAGgcGGCg- -3' miRNA: 3'- cguaGCGCG--------------GCGGCUGCUCuaCCGgg -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 38930 | 0.66 | 0.519869 |
Target: 5'- uGCAuuUCGCGagcuggugggaCGCCGACGAauacgccAUGGaCCCg -3' miRNA: 3'- -CGU--AGCGCg----------GCGGCUGCUc------UACC-GGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 49124 | 0.67 | 0.488866 |
Target: 5'- -gAUUGCcccGCCGCCG-CGGGAgaggugagaagcaUGGCCg -3' miRNA: 3'- cgUAGCG---CGGCGGCuGCUCU-------------ACCGGg -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 4575 | 0.67 | 0.46067 |
Target: 5'- -aGUCGCGUCGCCGcCGuagaGGAUGugaGCCg -3' miRNA: 3'- cgUAGCGCGGCGGCuGC----UCUAC---CGGg -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 43182 | 0.68 | 0.423248 |
Target: 5'- gGCAUuaUGC-CCGCUGGCG-GAUGGCg- -3' miRNA: 3'- -CGUA--GCGcGGCGGCUGCuCUACCGgg -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 22897 | 0.7 | 0.322766 |
Target: 5'- uGCGUCGUGCCaCgGGCGAGAaaaGCCg -3' miRNA: 3'- -CGUAGCGCGGcGgCUGCUCUac-CGGg -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 9008 | 0.68 | 0.405233 |
Target: 5'- ---cCGCGCUGUCGACGAGGgucagcGGaaaCCa -3' miRNA: 3'- cguaGCGCGGCGGCUGCUCUa-----CCg--GG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 24360 | 0.68 | 0.432433 |
Target: 5'- aGC-UC-CGCCGUgcccagauCGACGAGAaGGCCUc -3' miRNA: 3'- -CGuAGcGCGGCG--------GCUGCUCUaCCGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 50194 | 0.66 | 0.560945 |
Target: 5'- gGCAUgGCGCCGCUGAuaucUGGGGUaGUUUg -3' miRNA: 3'- -CGUAgCGCGGCGGCU----GCUCUAcCGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 50859 | 0.68 | 0.396408 |
Target: 5'- aGCAUUGCcgucGCCGUCGACGAaaaacuccGGCUCu -3' miRNA: 3'- -CGUAGCG----CGGCGGCUGCUcua-----CCGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 1605 | 0.66 | 0.538222 |
Target: 5'- cGCcgCGCaccacuGCCGCCGGauccucgcUGGCCCg -3' miRNA: 3'- -CGuaGCG------CGGCGGCUgcucu---ACCGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 27984 | 0.68 | 0.441735 |
Target: 5'- cGCA-CGUgGCCGCuuCGACGAGcacaagguaAUGGCCg -3' miRNA: 3'- -CGUaGCG-CGGCG--GCUGCUC---------UACCGGg -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 39831 | 0.7 | 0.325813 |
Target: 5'- aGCA-CGUGCCGCCGGacaccaaggccgccaUGuGGUGGCUg -3' miRNA: 3'- -CGUaGCGCGGCGGCU---------------GCuCUACCGGg -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 40702 | 0.7 | 0.300596 |
Target: 5'- aGgAUCGCcCUGauCCGGCG-GAUGGCCCc -3' miRNA: 3'- -CgUAGCGcGGC--GGCUGCuCUACCGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 29454 | 0.66 | 0.530036 |
Target: 5'- cCGUUGuCGUCaCCGACGAGGgcaaGCCCu -3' miRNA: 3'- cGUAGC-GCGGcGGCUGCUCUac--CGGG- -5' |
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12346 | 5' | -59.3 | NC_003324.1 | + | 42786 | 0.67 | 0.488866 |
Target: 5'- cGCAUCGUccgaugggaugauGCCucGCCaGCGGuugccgguccuGGUGGCCCg -3' miRNA: 3'- -CGUAGCG-------------CGG--CGGcUGCU-----------CUACCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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