miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12347 5' -57.6 NC_003324.1 + 22686 1.06 0.000771
Target:  5'- gCUCGGCAACGCGGCAGGCAGCCAAAAg -3'
miRNA:   3'- -GAGCCGUUGCGCCGUCCGUCGGUUUU- -5'
12347 5' -57.6 NC_003324.1 + 14598 0.76 0.129532
Target:  5'- -cCGGCGGCGCaGGCGguagcguGGCGGCCGGAGc -3'
miRNA:   3'- gaGCCGUUGCG-CCGU-------CCGUCGGUUUU- -5'
12347 5' -57.6 NC_003324.1 + 42380 0.76 0.126306
Target:  5'- -cCGGC-ACGUGGCAGGCGGCgCAc-- -3'
miRNA:   3'- gaGCCGuUGCGCCGUCCGUCG-GUuuu -5'
12347 5' -57.6 NC_003324.1 + 21375 0.76 0.133579
Target:  5'- -cCGGCGAgGCGGCGaacGCGGCCGAGAu -3'
miRNA:   3'- gaGCCGUUgCGCCGUc--CGUCGGUUUU- -5'
12347 5' -57.6 NC_003324.1 + 44091 0.75 0.153475
Target:  5'- gCUCGGCAugauCcCGGC-GGCAGCCGAGGa -3'
miRNA:   3'- -GAGCCGUu---GcGCCGuCCGUCGGUUUU- -5'
12347 5' -57.6 NC_003324.1 + 32816 0.74 0.180871
Target:  5'- uUCGGC-GCaUGGCGGGCAGCCGc-- -3'
miRNA:   3'- gAGCCGuUGcGCCGUCCGUCGGUuuu -5'
12347 5' -57.6 NC_003324.1 + 8870 0.72 0.224073
Target:  5'- uUCGGUAGCcGCGGgAGauGCGGCCAAAu -3'
miRNA:   3'- gAGCCGUUG-CGCCgUC--CGUCGGUUUu -5'
12347 5' -57.6 NC_003324.1 + 16213 0.7 0.312617
Target:  5'- gUCGauaccGCGACGgGGCAGGCcguGCCGAc- -3'
miRNA:   3'- gAGC-----CGUUGCgCCGUCCGu--CGGUUuu -5'
12347 5' -57.6 NC_003324.1 + 53220 0.7 0.328385
Target:  5'- cCUCGGaUGAUGCGGCccuuacggucGGGgAGCCAGAc -3'
miRNA:   3'- -GAGCC-GUUGCGCCG----------UCCgUCGGUUUu -5'
12347 5' -57.6 NC_003324.1 + 31803 0.69 0.361658
Target:  5'- uUCGGCAACGuCGGCG---AGCCAAGc -3'
miRNA:   3'- gAGCCGUUGC-GCCGUccgUCGGUUUu -5'
12347 5' -57.6 NC_003324.1 + 44712 0.69 0.370335
Target:  5'- -cCGGCAuCGCaugGGCAGuCAGCCAAGg -3'
miRNA:   3'- gaGCCGUuGCG---CCGUCcGUCGGUUUu -5'
12347 5' -57.6 NC_003324.1 + 5497 0.69 0.370335
Target:  5'- aCUCGGCGcCGCagguGCGGGCgccaucuuccgAGCCGAAAu -3'
miRNA:   3'- -GAGCCGUuGCGc---CGUCCG-----------UCGGUUUU- -5'
12347 5' -57.6 NC_003324.1 + 49051 0.68 0.43492
Target:  5'- -gCGGCGGCGgGGCAauccauccGGCucugcaccggGGCCGAAAg -3'
miRNA:   3'- gaGCCGUUGCgCCGU--------CCG----------UCGGUUUU- -5'
12347 5' -57.6 NC_003324.1 + 32435 0.68 0.405507
Target:  5'- -aCGGUucuugauGACGCuGGCAacGGCAGCCAu-- -3'
miRNA:   3'- gaGCCG-------UUGCG-CCGU--CCGUCGGUuuu -5'
12347 5' -57.6 NC_003324.1 + 13163 0.68 0.406436
Target:  5'- gUCGGCGGCGguCGGC-GGCGGCgGu-- -3'
miRNA:   3'- gAGCCGUUGC--GCCGuCCGUCGgUuuu -5'
12347 5' -57.6 NC_003324.1 + 320 0.68 0.444669
Target:  5'- -cCGGCGAUGCGGCcGcCAGCCc--- -3'
miRNA:   3'- gaGCCGUUGCGCCGuCcGUCGGuuuu -5'
12347 5' -57.6 NC_003324.1 + 24856 0.68 0.425296
Target:  5'- uCUUGGCAAucUGCucGCGGGCGGCCu--- -3'
miRNA:   3'- -GAGCCGUU--GCGc-CGUCCGUCGGuuuu -5'
12347 5' -57.6 NC_003324.1 + 44308 0.68 0.444669
Target:  5'- -cCGG--GCGCGGUGGcGCGGCCGAu- -3'
miRNA:   3'- gaGCCguUGCGCCGUC-CGUCGGUUuu -5'
12347 5' -57.6 NC_003324.1 + 145 0.67 0.484835
Target:  5'- -cCGGCGcauaagagcgugGCuGCGGCAGGCAGaCGGGu -3'
miRNA:   3'- gaGCCGU------------UG-CGCCGUCCGUCgGUUUu -5'
12347 5' -57.6 NC_003324.1 + 45423 0.67 0.464526
Target:  5'- -aCGGCugUGauCGGCGGuGCAGCCAGu- -3'
miRNA:   3'- gaGCCGuuGC--GCCGUC-CGUCGGUUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.