miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12347 5' -57.6 NC_003324.1 + 145 0.67 0.484835
Target:  5'- -cCGGCGcauaagagcgugGCuGCGGCAGGCAGaCGGGu -3'
miRNA:   3'- gaGCCGU------------UG-CGCCGUCCGUCgGUUUu -5'
12347 5' -57.6 NC_003324.1 + 320 0.68 0.444669
Target:  5'- -cCGGCGAUGCGGCcGcCAGCCc--- -3'
miRNA:   3'- gaGCCGUUGCGCCGuCcGUCGGuuuu -5'
12347 5' -57.6 NC_003324.1 + 3511 0.66 0.557799
Target:  5'- -aCGGUGcuuucccACGCGGaAGuGCAGCCAAAu -3'
miRNA:   3'- gaGCCGU-------UGCGCCgUC-CGUCGGUUUu -5'
12347 5' -57.6 NC_003324.1 + 5497 0.69 0.370335
Target:  5'- aCUCGGCGcCGCagguGCGGGCgccaucuuccgAGCCGAAAu -3'
miRNA:   3'- -GAGCCGUuGCGc---CGUCCG-----------UCGGUUUU- -5'
12347 5' -57.6 NC_003324.1 + 6099 0.66 0.548072
Target:  5'- gUCGGCAGgaGCGGacuGGGCGGCa---- -3'
miRNA:   3'- gAGCCGUUg-CGCCg--UCCGUCGguuuu -5'
12347 5' -57.6 NC_003324.1 + 8870 0.72 0.224073
Target:  5'- uUCGGUAGCcGCGGgAGauGCGGCCAAAu -3'
miRNA:   3'- gAGCCGUUG-CGCCgUC--CGUCGGUUUu -5'
12347 5' -57.6 NC_003324.1 + 11554 0.67 0.464526
Target:  5'- uUCGGCcuuuGCG-GGCGaGCAGCCGAu- -3'
miRNA:   3'- gAGCCGu---UGCgCCGUcCGUCGGUUuu -5'
12347 5' -57.6 NC_003324.1 + 13163 0.68 0.406436
Target:  5'- gUCGGCGGCGguCGGC-GGCGGCgGu-- -3'
miRNA:   3'- gAGCCGUUGC--GCCGuCCGUCGgUuuu -5'
12347 5' -57.6 NC_003324.1 + 14598 0.76 0.129532
Target:  5'- -cCGGCGGCGCaGGCGguagcguGGCGGCCGGAGc -3'
miRNA:   3'- gaGCCGUUGCG-CCGU-------CCGUCGGUUUU- -5'
12347 5' -57.6 NC_003324.1 + 14819 0.67 0.494112
Target:  5'- aUCGGCAGCuuccuggGCGGCAucGGCGGaCUGAu- -3'
miRNA:   3'- gAGCCGUUG-------CGCCGU--CCGUC-GGUUuu -5'
12347 5' -57.6 NC_003324.1 + 16169 0.66 0.526655
Target:  5'- -cUGGCAcCGaGGCGGGCAccgcagcucccGCCAGAAa -3'
miRNA:   3'- gaGCCGUuGCgCCGUCCGU-----------CGGUUUU- -5'
12347 5' -57.6 NC_003324.1 + 16213 0.7 0.312617
Target:  5'- gUCGauaccGCGACGgGGCAGGCcguGCCGAc- -3'
miRNA:   3'- gAGC-----CGUUGCgCCGUCCGu--CGGUUuu -5'
12347 5' -57.6 NC_003324.1 + 16996 0.67 0.484835
Target:  5'- aUCGGUGACGCuGGCAG-CcGCCAc-- -3'
miRNA:   3'- gAGCCGUUGCG-CCGUCcGuCGGUuuu -5'
12347 5' -57.6 NC_003324.1 + 19618 0.67 0.50556
Target:  5'- uUUGaGCAGCGCGggcuGCAGGuCAGUCAGu- -3'
miRNA:   3'- gAGC-CGUUGCGC----CGUCC-GUCGGUUuu -5'
12347 5' -57.6 NC_003324.1 + 21375 0.76 0.133579
Target:  5'- -cCGGCGAgGCGGCGaacGCGGCCGAGAu -3'
miRNA:   3'- gaGCCGUUgCGCCGUc--CGUCGGUUUU- -5'
12347 5' -57.6 NC_003324.1 + 22686 1.06 0.000771
Target:  5'- gCUCGGCAACGCGGCAGGCAGCCAAAAg -3'
miRNA:   3'- -GAGCCGUUGCGCCGUCCGUCGGUUUU- -5'
12347 5' -57.6 NC_003324.1 + 23546 0.66 0.516064
Target:  5'- -aCaGCGugGCGGCGGGCGcGCUc--- -3'
miRNA:   3'- gaGcCGUugCGCCGUCCGU-CGGuuuu -5'
12347 5' -57.6 NC_003324.1 + 24856 0.68 0.425296
Target:  5'- uCUUGGCAAucUGCucGCGGGCGGCCu--- -3'
miRNA:   3'- -GAGCCGUU--GCGc-CGUCCGUCGGuuuu -5'
12347 5' -57.6 NC_003324.1 + 26926 0.67 0.451565
Target:  5'- --gGGCAugGCGGCgaucgacgAGGCAcucagcggagcggcGCCAAAGc -3'
miRNA:   3'- gagCCGUugCGCCG--------UCCGU--------------CGGUUUU- -5'
12347 5' -57.6 NC_003324.1 + 29958 0.66 0.558884
Target:  5'- --gGGCGuccugcguaGCGGC-GGCAGCCGGGu -3'
miRNA:   3'- gagCCGUug-------CGCCGuCCGUCGGUUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.