Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12347 | 5' | -57.6 | NC_003324.1 | + | 31639 | 0.67 | 0.492044 |
Target: 5'- cCUUGGCAuaucgagaccgcggGCGCGcGU-GGCGGCCAu-- -3' miRNA: 3'- -GAGCCGU--------------UGCGC-CGuCCGUCGGUuuu -5' |
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12347 | 5' | -57.6 | NC_003324.1 | + | 31803 | 0.69 | 0.361658 |
Target: 5'- uUCGGCAACGuCGGCG---AGCCAAGc -3' miRNA: 3'- gAGCCGUUGC-GCCGUccgUCGGUUUu -5' |
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12347 | 5' | -57.6 | NC_003324.1 | + | 32435 | 0.68 | 0.405507 |
Target: 5'- -aCGGUucuugauGACGCuGGCAacGGCAGCCAu-- -3' miRNA: 3'- gaGCCG-------UUGCG-CCGU--CCGUCGGUuuu -5' |
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12347 | 5' | -57.6 | NC_003324.1 | + | 32536 | 0.66 | 0.558884 |
Target: 5'- --aGGCGACGagGGCAuGGCuGCCGu-- -3' miRNA: 3'- gagCCGUUGCg-CCGU-CCGuCGGUuuu -5' |
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12347 | 5' | -57.6 | NC_003324.1 | + | 32816 | 0.74 | 0.180871 |
Target: 5'- uUCGGC-GCaUGGCGGGCAGCCGc-- -3' miRNA: 3'- gAGCCGuUGcGCCGUCCGUCGGUuuu -5' |
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12347 | 5' | -57.6 | NC_003324.1 | + | 36288 | 0.66 | 0.537326 |
Target: 5'- -aUGGCAuCGgGGCGGGCGauuucuuccGCCAGc- -3' miRNA: 3'- gaGCCGUuGCgCCGUCCGU---------CGGUUuu -5' |
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12347 | 5' | -57.6 | NC_003324.1 | + | 36875 | 0.66 | 0.558884 |
Target: 5'- -aCGGCGACGaGGCAauGGaugAGCCGGAGc -3' miRNA: 3'- gaGCCGUUGCgCCGU--CCg--UCGGUUUU- -5' |
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12347 | 5' | -57.6 | NC_003324.1 | + | 41657 | 0.66 | 0.548072 |
Target: 5'- gUCGGCGGCGCGac--GUAGCCGAc- -3' miRNA: 3'- gAGCCGUUGCGCcgucCGUCGGUUuu -5' |
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12347 | 5' | -57.6 | NC_003324.1 | + | 42380 | 0.76 | 0.126306 |
Target: 5'- -cCGGC-ACGUGGCAGGCGGCgCAc-- -3' miRNA: 3'- gaGCCGuUGCGCCGUCCGUCG-GUuuu -5' |
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12347 | 5' | -57.6 | NC_003324.1 | + | 43324 | 0.66 | 0.526655 |
Target: 5'- --aGGCGACcCuGCAGGCGGCCc--- -3' miRNA: 3'- gagCCGUUGcGcCGUCCGUCGGuuuu -5' |
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12347 | 5' | -57.6 | NC_003324.1 | + | 43645 | 0.67 | 0.474626 |
Target: 5'- aUCGGCugacguuGCGCGGCGuguGGCugauGCUGGAAg -3' miRNA: 3'- gAGCCGu------UGCGCCGU---CCGu---CGGUUUU- -5' |
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12347 | 5' | -57.6 | NC_003324.1 | + | 44091 | 0.75 | 0.153475 |
Target: 5'- gCUCGGCAugauCcCGGC-GGCAGCCGAGGa -3' miRNA: 3'- -GAGCCGUu---GcGCCGuCCGUCGGUUUU- -5' |
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12347 | 5' | -57.6 | NC_003324.1 | + | 44308 | 0.68 | 0.444669 |
Target: 5'- -cCGG--GCGCGGUGGcGCGGCCGAu- -3' miRNA: 3'- gaGCCguUGCGCCGUC-CGUCGGUUuu -5' |
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12347 | 5' | -57.6 | NC_003324.1 | + | 44712 | 0.69 | 0.370335 |
Target: 5'- -cCGGCAuCGCaugGGCAGuCAGCCAAGg -3' miRNA: 3'- gaGCCGUuGCG---CCGUCcGUCGGUUUu -5' |
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12347 | 5' | -57.6 | NC_003324.1 | + | 44917 | 0.66 | 0.537326 |
Target: 5'- -aCGGCA--GCaGCGGGCAcGCCAAu- -3' miRNA: 3'- gaGCCGUugCGcCGUCCGU-CGGUUuu -5' |
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12347 | 5' | -57.6 | NC_003324.1 | + | 45423 | 0.67 | 0.464526 |
Target: 5'- -aCGGCugUGauCGGCGGuGCAGCCAGu- -3' miRNA: 3'- gaGCCGuuGC--GCCGUC-CGUCGGUUuu -5' |
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12347 | 5' | -57.6 | NC_003324.1 | + | 46322 | 0.67 | 0.484835 |
Target: 5'- gCUCGcG-AGCGCGGUGGGCucuGCCGu-- -3' miRNA: 3'- -GAGC-CgUUGCGCCGUCCGu--CGGUuuu -5' |
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12347 | 5' | -57.6 | NC_003324.1 | + | 49051 | 0.68 | 0.43492 |
Target: 5'- -gCGGCGGCGgGGCAauccauccGGCucugcaccggGGCCGAAAg -3' miRNA: 3'- gaGCCGUUGCgCCGU--------CCG----------UCGGUUUU- -5' |
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12347 | 5' | -57.6 | NC_003324.1 | + | 53220 | 0.7 | 0.328385 |
Target: 5'- cCUCGGaUGAUGCGGCccuuacggucGGGgAGCCAGAc -3' miRNA: 3'- -GAGCC-GUUGCGCCG----------UCCgUCGGUUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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