Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12349 | 5' | -55.9 | NC_003324.1 | + | 18110 | 0.66 | 0.681699 |
Target: 5'- cGCCUaUCgcauggCCCGUGGCGcCgGCCAa -3' miRNA: 3'- uCGGA-AGauaa--GGGCGCCGUuG-CGGU- -5' |
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12349 | 5' | -55.9 | NC_003324.1 | + | 22599 | 0.66 | 0.681699 |
Target: 5'- cGGCCUUUUGgcugCCUGCcGCGuUGCCGa -3' miRNA: 3'- -UCGGAAGAUaa--GGGCGcCGUuGCGGU- -5' |
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12349 | 5' | -55.9 | NC_003324.1 | + | 51009 | 0.66 | 0.670742 |
Target: 5'- aGGCCUcaUAUUCuCCGgGGCGcuCGUCAa -3' miRNA: 3'- -UCGGAagAUAAG-GGCgCCGUu-GCGGU- -5' |
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12349 | 5' | -55.9 | NC_003324.1 | + | 23408 | 0.66 | 0.659748 |
Target: 5'- cGGCUUUCUcgUUggCCGCgucGGUGGCGCCc -3' miRNA: 3'- -UCGGAAGAuaAG--GGCG---CCGUUGCGGu -5' |
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12349 | 5' | -55.9 | NC_003324.1 | + | 38081 | 0.66 | 0.659748 |
Target: 5'- cGCCUUCUGgcgaagCGCGuCGGCGCCGu -3' miRNA: 3'- uCGGAAGAUaagg--GCGCcGUUGCGGU- -5' |
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12349 | 5' | -55.9 | NC_003324.1 | + | 39271 | 0.66 | 0.648728 |
Target: 5'- cGCCUaugaUCgGUUgCCGCcguGGCuGCGCCAg -3' miRNA: 3'- uCGGA----AGaUAAgGGCG---CCGuUGCGGU- -5' |
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12349 | 5' | -55.9 | NC_003324.1 | + | 40832 | 0.66 | 0.648728 |
Target: 5'- gAGUUUUCUAUUUCCGCcucGCAGCGgUg -3' miRNA: 3'- -UCGGAAGAUAAGGGCGc--CGUUGCgGu -5' |
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12349 | 5' | -55.9 | NC_003324.1 | + | 22814 | 0.66 | 0.637693 |
Target: 5'- cGGCUUUUcucgCCCGUGGCAcgACGCa- -3' miRNA: 3'- -UCGGAAGauaaGGGCGCCGU--UGCGgu -5' |
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12349 | 5' | -55.9 | NC_003324.1 | + | 42227 | 0.66 | 0.63659 |
Target: 5'- cGGCCcauggUCUGUUgcugaucCCCGCGGCGGCa--- -3' miRNA: 3'- -UCGGa----AGAUAA-------GGGCGCCGUUGcggu -5' |
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12349 | 5' | -55.9 | NC_003324.1 | + | 33766 | 0.67 | 0.593601 |
Target: 5'- aAGCCUgugAUgCCUugGCGGCAGCGCa- -3' miRNA: 3'- -UCGGAagaUAaGGG--CGCCGUUGCGgu -5' |
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12349 | 5' | -55.9 | NC_003324.1 | + | 42727 | 0.67 | 0.582637 |
Target: 5'- uGGCCUUgCUGUUgcagaUCCGCGccCGGCGCCGc -3' miRNA: 3'- -UCGGAA-GAUAA-----GGGCGCc-GUUGCGGU- -5' |
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12349 | 5' | -55.9 | NC_003324.1 | + | 9121 | 0.67 | 0.582637 |
Target: 5'- aAGCuCUacUUUAcUCCCgGCGGCAaACGCCu -3' miRNA: 3'- -UCG-GA--AGAUaAGGG-CGCCGU-UGCGGu -5' |
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12349 | 5' | -55.9 | NC_003324.1 | + | 9639 | 0.67 | 0.571714 |
Target: 5'- gGGCCaaca----CCGcCGGCAACGCCAa -3' miRNA: 3'- -UCGGaagauaagGGC-GCCGUUGCGGU- -5' |
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12349 | 5' | -55.9 | NC_003324.1 | + | 26307 | 0.67 | 0.570625 |
Target: 5'- cGGUacgUCUGUU-CCGCGGCuucuuucAGCGCCGg -3' miRNA: 3'- -UCGga-AGAUAAgGGCGCCG-------UUGCGGU- -5' |
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12349 | 5' | -55.9 | NC_003324.1 | + | 49028 | 0.68 | 0.550026 |
Target: 5'- cGGCCaugcUUCUcaccucUCCCGCGGCGGCGg-- -3' miRNA: 3'- -UCGG----AAGAua----AGGGCGCCGUUGCggu -5' |
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12349 | 5' | -55.9 | NC_003324.1 | + | 51538 | 0.68 | 0.528598 |
Target: 5'- uGGCUUgggCUGccgUCuuGCGGCAACGgCGu -3' miRNA: 3'- -UCGGAa--GAUa--AGggCGCCGUUGCgGU- -5' |
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12349 | 5' | -55.9 | NC_003324.1 | + | 30475 | 0.69 | 0.507486 |
Target: 5'- aAGCCUcCguaUCCUggucgaggGCGGCAugGCCGa -3' miRNA: 3'- -UCGGAaGauaAGGG--------CGCCGUugCGGU- -5' |
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12349 | 5' | -55.9 | NC_003324.1 | + | 31784 | 0.69 | 0.476519 |
Target: 5'- cGGCCUcuUCggg-CCCGUauucGGCAACGUCGg -3' miRNA: 3'- -UCGGA--AGauaaGGGCG----CCGUUGCGGU- -5' |
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12349 | 5' | -55.9 | NC_003324.1 | + | 51584 | 0.69 | 0.466405 |
Target: 5'- cGCCUUCggUAUUCCCGa-GCAAgaGCCAc -3' miRNA: 3'- uCGGAAG--AUAAGGGCgcCGUUg-CGGU- -5' |
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12349 | 5' | -55.9 | NC_003324.1 | + | 47938 | 0.69 | 0.456404 |
Target: 5'- cGCCggUCagguacgGUUUCaGCGGCAGCGCCGc -3' miRNA: 3'- uCGGa-AGa------UAAGGgCGCCGUUGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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