miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12349 5' -55.9 NC_003324.1 + 18110 0.66 0.681699
Target:  5'- cGCCUaUCgcauggCCCGUGGCGcCgGCCAa -3'
miRNA:   3'- uCGGA-AGauaa--GGGCGCCGUuG-CGGU- -5'
12349 5' -55.9 NC_003324.1 + 22599 0.66 0.681699
Target:  5'- cGGCCUUUUGgcugCCUGCcGCGuUGCCGa -3'
miRNA:   3'- -UCGGAAGAUaa--GGGCGcCGUuGCGGU- -5'
12349 5' -55.9 NC_003324.1 + 51009 0.66 0.670742
Target:  5'- aGGCCUcaUAUUCuCCGgGGCGcuCGUCAa -3'
miRNA:   3'- -UCGGAagAUAAG-GGCgCCGUu-GCGGU- -5'
12349 5' -55.9 NC_003324.1 + 38081 0.66 0.659748
Target:  5'- cGCCUUCUGgcgaagCGCGuCGGCGCCGu -3'
miRNA:   3'- uCGGAAGAUaagg--GCGCcGUUGCGGU- -5'
12349 5' -55.9 NC_003324.1 + 23408 0.66 0.659748
Target:  5'- cGGCUUUCUcgUUggCCGCgucGGUGGCGCCc -3'
miRNA:   3'- -UCGGAAGAuaAG--GGCG---CCGUUGCGGu -5'
12349 5' -55.9 NC_003324.1 + 40832 0.66 0.648728
Target:  5'- gAGUUUUCUAUUUCCGCcucGCAGCGgUg -3'
miRNA:   3'- -UCGGAAGAUAAGGGCGc--CGUUGCgGu -5'
12349 5' -55.9 NC_003324.1 + 39271 0.66 0.648728
Target:  5'- cGCCUaugaUCgGUUgCCGCcguGGCuGCGCCAg -3'
miRNA:   3'- uCGGA----AGaUAAgGGCG---CCGuUGCGGU- -5'
12349 5' -55.9 NC_003324.1 + 22814 0.66 0.637693
Target:  5'- cGGCUUUUcucgCCCGUGGCAcgACGCa- -3'
miRNA:   3'- -UCGGAAGauaaGGGCGCCGU--UGCGgu -5'
12349 5' -55.9 NC_003324.1 + 42227 0.66 0.63659
Target:  5'- cGGCCcauggUCUGUUgcugaucCCCGCGGCGGCa--- -3'
miRNA:   3'- -UCGGa----AGAUAA-------GGGCGCCGUUGcggu -5'
12349 5' -55.9 NC_003324.1 + 33766 0.67 0.593601
Target:  5'- aAGCCUgugAUgCCUugGCGGCAGCGCa- -3'
miRNA:   3'- -UCGGAagaUAaGGG--CGCCGUUGCGgu -5'
12349 5' -55.9 NC_003324.1 + 42727 0.67 0.582637
Target:  5'- uGGCCUUgCUGUUgcagaUCCGCGccCGGCGCCGc -3'
miRNA:   3'- -UCGGAA-GAUAA-----GGGCGCc-GUUGCGGU- -5'
12349 5' -55.9 NC_003324.1 + 9121 0.67 0.582637
Target:  5'- aAGCuCUacUUUAcUCCCgGCGGCAaACGCCu -3'
miRNA:   3'- -UCG-GA--AGAUaAGGG-CGCCGU-UGCGGu -5'
12349 5' -55.9 NC_003324.1 + 9639 0.67 0.571714
Target:  5'- gGGCCaaca----CCGcCGGCAACGCCAa -3'
miRNA:   3'- -UCGGaagauaagGGC-GCCGUUGCGGU- -5'
12349 5' -55.9 NC_003324.1 + 26307 0.67 0.570625
Target:  5'- cGGUacgUCUGUU-CCGCGGCuucuuucAGCGCCGg -3'
miRNA:   3'- -UCGga-AGAUAAgGGCGCCG-------UUGCGGU- -5'
12349 5' -55.9 NC_003324.1 + 49028 0.68 0.550026
Target:  5'- cGGCCaugcUUCUcaccucUCCCGCGGCGGCGg-- -3'
miRNA:   3'- -UCGG----AAGAua----AGGGCGCCGUUGCggu -5'
12349 5' -55.9 NC_003324.1 + 51538 0.68 0.528598
Target:  5'- uGGCUUgggCUGccgUCuuGCGGCAACGgCGu -3'
miRNA:   3'- -UCGGAa--GAUa--AGggCGCCGUUGCgGU- -5'
12349 5' -55.9 NC_003324.1 + 30475 0.69 0.507486
Target:  5'- aAGCCUcCguaUCCUggucgaggGCGGCAugGCCGa -3'
miRNA:   3'- -UCGGAaGauaAGGG--------CGCCGUugCGGU- -5'
12349 5' -55.9 NC_003324.1 + 31784 0.69 0.476519
Target:  5'- cGGCCUcuUCggg-CCCGUauucGGCAACGUCGg -3'
miRNA:   3'- -UCGGA--AGauaaGGGCG----CCGUUGCGGU- -5'
12349 5' -55.9 NC_003324.1 + 51584 0.69 0.466405
Target:  5'- cGCCUUCggUAUUCCCGa-GCAAgaGCCAc -3'
miRNA:   3'- uCGGAAG--AUAAGGGCgcCGUUg-CGGU- -5'
12349 5' -55.9 NC_003324.1 + 47938 0.69 0.456404
Target:  5'- cGCCggUCagguacgGUUUCaGCGGCAGCGCCGc -3'
miRNA:   3'- uCGGa-AGa------UAAGGgCGCCGUUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.