miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12350 3' -52.8 NC_003324.1 + 23931 1.1 0.001881
Target:  5'- uCUACAAGACGCCGGCCGGAAACUACGa -3'
miRNA:   3'- -GAUGUUCUGCGGCCGGCCUUUGAUGC- -5'
12350 3' -52.8 NC_003324.1 + 9425 0.78 0.239602
Target:  5'- --uCGAGGCGCCGaGCUGGAGAUUGCc -3'
miRNA:   3'- gauGUUCUGCGGC-CGGCCUUUGAUGc -5'
12350 3' -52.8 NC_003324.1 + 8340 0.76 0.317352
Target:  5'- uUACGGuGAcCGUCGGCgGGGAGCUGCGu -3'
miRNA:   3'- gAUGUU-CU-GCGGCCGgCCUUUGAUGC- -5'
12350 3' -52.8 NC_003324.1 + 42651 0.76 0.333378
Target:  5'- -aGCGAGGCuGCCGGCaCGGucAUUGCGg -3'
miRNA:   3'- gaUGUUCUG-CGGCCG-GCCuuUGAUGC- -5'
12350 3' -52.8 NC_003324.1 + 43366 0.74 0.40327
Target:  5'- cCUGCGAGGCGUCGGCgaaauccuUGaGAAACUGCc -3'
miRNA:   3'- -GAUGUUCUGCGGCCG--------GC-CUUUGAUGc -5'
12350 3' -52.8 NC_003324.1 + 8377 0.74 0.430798
Target:  5'- cCUGCGgauGACGCUGGCUGcGAcggcgacGACUACGg -3'
miRNA:   3'- -GAUGUu--CUGCGGCCGGC-CU-------UUGAUGC- -5'
12350 3' -52.8 NC_003324.1 + 34565 0.74 0.441525
Target:  5'- -aACAAGACGCCGGCCaacaAGACgACGc -3'
miRNA:   3'- gaUGUUCUGCGGCCGGcc--UUUGaUGC- -5'
12350 3' -52.8 NC_003324.1 + 42273 0.74 0.441525
Target:  5'- cCUACAGGGCGCgGGUCGGcaacgcuGAgUGCGc -3'
miRNA:   3'- -GAUGUUCUGCGgCCGGCCu------UUgAUGC- -5'
12350 3' -52.8 NC_003324.1 + 4708 0.72 0.506723
Target:  5'- --cCAGGGCgGCUGGCUGGAAauccagaaggcggcuGCUACGg -3'
miRNA:   3'- gauGUUCUG-CGGCCGGCCUU---------------UGAUGC- -5'
12350 3' -52.8 NC_003324.1 + 14605 0.71 0.556005
Target:  5'- -cGCAGGcgguaGCGUggCGGCCGGA-GCUACGg -3'
miRNA:   3'- gaUGUUC-----UGCG--GCCGGCCUuUGAUGC- -5'
12350 3' -52.8 NC_003324.1 + 42864 0.71 0.598831
Target:  5'- --uCGAGGCuGCCGGCCGGcccgcgaGGAuCUGCGa -3'
miRNA:   3'- gauGUUCUG-CGGCCGGCC-------UUU-GAUGC- -5'
12350 3' -52.8 NC_003324.1 + 28821 0.7 0.655402
Target:  5'- aUGCGGaGCG-CGGCgCGGGAACUGCa -3'
miRNA:   3'- gAUGUUcUGCgGCCG-GCCUUUGAUGc -5'
12350 3' -52.8 NC_003324.1 + 36754 0.69 0.709222
Target:  5'- aUGCGAGgcccguggaGCGCUGGCCGGuguuuucGAGCUcCGg -3'
miRNA:   3'- gAUGUUC---------UGCGGCCGGCC-------UUUGAuGC- -5'
12350 3' -52.8 NC_003324.1 + 55040 0.69 0.710305
Target:  5'- -gGCAAGGCGgaCGGCUGG--GCUGCc -3'
miRNA:   3'- gaUGUUCUGCg-GCCGGCCuuUGAUGc -5'
12350 3' -52.8 NC_003324.1 + 50427 0.69 0.710305
Target:  5'- -cGCAAGGCGCUGGgCGuGGugcagcucgcagGGCUGCGc -3'
miRNA:   3'- gaUGUUCUGCGGCCgGC-CU------------UUGAUGC- -5'
12350 3' -52.8 NC_003324.1 + 51517 0.69 0.721098
Target:  5'- -gACgAGGACGaacaUGGCCGGugGCUugGg -3'
miRNA:   3'- gaUG-UUCUGCg---GCCGGCCuuUGAugC- -5'
12350 3' -52.8 NC_003324.1 + 32310 0.68 0.742401
Target:  5'- uCUGCGcGGCGCCGcaucuCCGGAucCUGCa -3'
miRNA:   3'- -GAUGUuCUGCGGCc----GGCCUuuGAUGc -5'
12350 3' -52.8 NC_003324.1 + 22815 0.68 0.742401
Target:  5'- gCUGCucGACGCCGGCaaaaaGGAcgaugGGCUGa- -3'
miRNA:   3'- -GAUGuuCUGCGGCCGg----CCU-----UUGAUgc -5'
12350 3' -52.8 NC_003324.1 + 52378 0.68 0.752888
Target:  5'- -cGC-AGACGCCGGCCGccccGAAUcggGCGg -3'
miRNA:   3'- gaUGuUCUGCGGCCGGCc---UUUGa--UGC- -5'
12350 3' -52.8 NC_003324.1 + 16130 0.68 0.752888
Target:  5'- -cGCAGGGCGCuuCGGUagCGGggGCcGCGc -3'
miRNA:   3'- gaUGUUCUGCG--GCCG--GCCuuUGaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.