Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12350 | 3' | -52.8 | NC_003324.1 | + | 25617 | 0.66 | 0.848998 |
Target: 5'- gCUGCu--GCGCCGGCaCGGcuGCUGa- -3' miRNA: 3'- -GAUGuucUGCGGCCG-GCCuuUGAUgc -5' |
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12350 | 3' | -52.8 | NC_003324.1 | + | 49873 | 0.67 | 0.793469 |
Target: 5'- -gGCAAGugaGCCGGCgGGcAAagaucGCUGCGu -3' miRNA: 3'- gaUGUUCug-CGGCCGgCC-UU-----UGAUGC- -5' |
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12350 | 3' | -52.8 | NC_003324.1 | + | 28252 | 0.67 | 0.812777 |
Target: 5'- gCUGCGAcuGGUGCCGGaucggUGGAAGCUACa -3' miRNA: 3'- -GAUGUU--CUGCGGCCg----GCCUUUGAUGc -5' |
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12350 | 3' | -52.8 | NC_003324.1 | + | 30470 | 0.67 | 0.812777 |
Target: 5'- uUGCGGGucgaaucgGCGCCgccgagcaGGCCcucGGAAACUGCGc -3' miRNA: 3'- gAUGUUC--------UGCGG--------CCGG---CCUUUGAUGC- -5' |
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12350 | 3' | -52.8 | NC_003324.1 | + | 42634 | 0.67 | 0.822147 |
Target: 5'- -cGCGcGGCGCCGGgCGcGGAuCUGCa -3' miRNA: 3'- gaUGUuCUGCGGCCgGC-CUUuGAUGc -5' |
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12350 | 3' | -52.8 | NC_003324.1 | + | 26727 | 0.67 | 0.831313 |
Target: 5'- -aGCAGGGCGCgGGCCuuuu-CUGCa -3' miRNA: 3'- gaUGUUCUGCGgCCGGccuuuGAUGc -5' |
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12350 | 3' | -52.8 | NC_003324.1 | + | 34453 | 0.67 | 0.831313 |
Target: 5'- -gGCAAG-CGUCGGCgGGAuuucgcgcuuCUGCGu -3' miRNA: 3'- gaUGUUCuGCGGCCGgCCUuu--------GAUGC- -5' |
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12350 | 3' | -52.8 | NC_003324.1 | + | 46421 | 0.67 | 0.831313 |
Target: 5'- cCUGCAGuguuCGCCGGCCGaccuGCUAuCGg -3' miRNA: 3'- -GAUGUUcu--GCGGCCGGCcuu-UGAU-GC- -5' |
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12350 | 3' | -52.8 | NC_003324.1 | + | 17175 | 0.66 | 0.840267 |
Target: 5'- -gACGAGGCGCUGGCgcgucuguCGGAcgcGGCUuucgGCGu -3' miRNA: 3'- gaUGUUCUGCGGCCG--------GCCU---UUGA----UGC- -5' |
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12350 | 3' | -52.8 | NC_003324.1 | + | 30601 | 0.68 | 0.763251 |
Target: 5'- -aGCgAGGAUGCCGcCCGGAAGC-AUGg -3' miRNA: 3'- gaUG-UUCUGCGGCcGGCCUUUGaUGC- -5' |
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12350 | 3' | -52.8 | NC_003324.1 | + | 16130 | 0.68 | 0.752888 |
Target: 5'- -cGCAGGGCGCuuCGGUagCGGggGCcGCGc -3' miRNA: 3'- gaUGUUCUGCG--GCCG--GCCuuUGaUGC- -5' |
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12350 | 3' | -52.8 | NC_003324.1 | + | 32310 | 0.68 | 0.742401 |
Target: 5'- uCUGCGcGGCGCCGcaucuCCGGAucCUGCa -3' miRNA: 3'- -GAUGUuCUGCGGCc----GGCCUuuGAUGc -5' |
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12350 | 3' | -52.8 | NC_003324.1 | + | 42273 | 0.74 | 0.441525 |
Target: 5'- cCUACAGGGCGCgGGUCGGcaacgcuGAgUGCGc -3' miRNA: 3'- -GAUGUUCUGCGgCCGGCCu------UUgAUGC- -5' |
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12350 | 3' | -52.8 | NC_003324.1 | + | 4708 | 0.72 | 0.506723 |
Target: 5'- --cCAGGGCgGCUGGCUGGAAauccagaaggcggcuGCUACGg -3' miRNA: 3'- gauGUUCUG-CGGCCGGCCUU---------------UGAUGC- -5' |
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12350 | 3' | -52.8 | NC_003324.1 | + | 14605 | 0.71 | 0.556005 |
Target: 5'- -cGCAGGcgguaGCGUggCGGCCGGA-GCUACGg -3' miRNA: 3'- gaUGUUC-----UGCG--GCCGGCCUuUGAUGC- -5' |
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12350 | 3' | -52.8 | NC_003324.1 | + | 42864 | 0.71 | 0.598831 |
Target: 5'- --uCGAGGCuGCCGGCCGGcccgcgaGGAuCUGCGa -3' miRNA: 3'- gauGUUCUG-CGGCCGGCC-------UUU-GAUGC- -5' |
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12350 | 3' | -52.8 | NC_003324.1 | + | 36754 | 0.69 | 0.709222 |
Target: 5'- aUGCGAGgcccguggaGCGCUGGCCGGuguuuucGAGCUcCGg -3' miRNA: 3'- gAUGUUC---------UGCGGCCGGCC-------UUUGAuGC- -5' |
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12350 | 3' | -52.8 | NC_003324.1 | + | 50427 | 0.69 | 0.710305 |
Target: 5'- -cGCAAGGCGCUGGgCGuGGugcagcucgcagGGCUGCGc -3' miRNA: 3'- gaUGUUCUGCGGCCgGC-CU------------UUGAUGC- -5' |
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12350 | 3' | -52.8 | NC_003324.1 | + | 55040 | 0.69 | 0.710305 |
Target: 5'- -gGCAAGGCGgaCGGCUGG--GCUGCc -3' miRNA: 3'- gaUGUUCUGCg-GCCGGCCuuUGAUGc -5' |
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12350 | 3' | -52.8 | NC_003324.1 | + | 51517 | 0.69 | 0.721098 |
Target: 5'- -gACgAGGACGaacaUGGCCGGugGCUugGg -3' miRNA: 3'- gaUG-UUCUGCg---GCCGGCCuuUGAugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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