Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12353 | 3' | -54.7 | NC_003324.1 | + | 57378 | 0.74 | 0.303443 |
Target: 5'- -cGGCGGAg-GCgAGGGCGGCaCGACCg -3' miRNA: 3'- gcUCGUCUaaCGgUUCUGCCG-GCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 48464 | 0.75 | 0.287974 |
Target: 5'- cCGAGCAGGUaggcGCCAAGggcaacuGCGaGCCGGCUu -3' miRNA: 3'- -GCUCGUCUAa---CGGUUC-------UGC-CGGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 35455 | 0.76 | 0.241521 |
Target: 5'- cCGAGCAGGcUGCagcAGcACaGGCCGACCa -3' miRNA: 3'- -GCUCGUCUaACGgu-UC-UG-CCGGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 24929 | 1.12 | 0.000797 |
Target: 5'- gCGAGCAGAUUGCCAAGACGGCCGACCu -3' miRNA: 3'- -GCUCGUCUAACGGUUCUGCCGGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 12795 | 0.68 | 0.642126 |
Target: 5'- aCGAGCGca---CUAAGaACGGCUGACCa -3' miRNA: 3'- -GCUCGUcuaacGGUUC-UGCCGGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 32215 | 0.68 | 0.653093 |
Target: 5'- gGGGCGGcccgGcCCGAGGCGGa-GACCa -3' miRNA: 3'- gCUCGUCuaa-C-GGUUCUGCCggCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 29581 | 0.66 | 0.780094 |
Target: 5'- aGAGCAGAagccggUUaCCGAGAUGcGcCCGACg -3' miRNA: 3'- gCUCGUCU------AAcGGUUCUGC-C-GGCUGg -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 13532 | 0.66 | 0.749642 |
Target: 5'- gCGAGCAGcuuAUUGaacuCCGcGGCGGCgGugCa -3' miRNA: 3'- -GCUCGUC---UAAC----GGUuCUGCCGgCugG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 57134 | 0.66 | 0.749642 |
Target: 5'- ---uCAGAagGCCAAGACGGCUuGCg -3' miRNA: 3'- gcucGUCUaaCGGUUCUGCCGGcUGg -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 31621 | 0.66 | 0.739239 |
Target: 5'- gCGGGCGcgcguGGcgGCCAuucucacgacgaGGACGGCgGACUg -3' miRNA: 3'- -GCUCGU-----CUaaCGGU------------UCUGCCGgCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 3154 | 0.66 | 0.739239 |
Target: 5'- aGAGCGGGagcGCCGu-GCGGCCauugagagaGACCg -3' miRNA: 3'- gCUCGUCUaa-CGGUucUGCCGG---------CUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 31180 | 0.67 | 0.707429 |
Target: 5'- cCGAGCAGcagcgcAUUGCCGcaaGGAcCGGCacggacaaucaGGCCg -3' miRNA: 3'- -GCUCGUC------UAACGGU---UCU-GCCGg----------CUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 26895 | 0.67 | 0.703132 |
Target: 5'- gGAGCGGcgccaaagccaGCCAAGcgcACGGCCGcgucuGCCa -3' miRNA: 3'- gCUCGUCuaa--------CGGUUC---UGCCGGC-----UGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 43676 | 0.67 | 0.697744 |
Target: 5'- uCGAGCGcGAccGCCAAGuaucaggcccucaauCGGCUGACg -3' miRNA: 3'- -GCUCGU-CUaaCGGUUCu--------------GCCGGCUGg -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 600 | 0.67 | 0.685838 |
Target: 5'- -cGGUAGAUgGUCGAG-CuGCCGACCu -3' miRNA: 3'- gcUCGUCUAaCGGUUCuGcCGGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 1766 | 0.67 | 0.685838 |
Target: 5'- gGAGauCAGcgUGCCAGGACGaaCCG-CCg -3' miRNA: 3'- gCUC--GUCuaACGGUUCUGCc-GGCuGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 7470 | 0.67 | 0.685838 |
Target: 5'- uCGAGCAGGaaGCCGGGcaGCGuGCgGGCa -3' miRNA: 3'- -GCUCGUCUaaCGGUUC--UGC-CGgCUGg -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 22678 | 0.67 | 0.685838 |
Target: 5'- aCGcGGCAGGcaGCCAaaAGGCcGCCGAUCu -3' miRNA: 3'- -GC-UCGUCUaaCGGU--UCUGcCGGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 30808 | 0.68 | 0.674959 |
Target: 5'- cCGAGCAGc------AGGCGGCCGACg -3' miRNA: 3'- -GCUCGUCuaacgguUCUGCCGGCUGg -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 39834 | 0.68 | 0.674959 |
Target: 5'- uCGAGCAcg-UGCCGccGGACaccaaGGCCG-CCa -3' miRNA: 3'- -GCUCGUcuaACGGU--UCUG-----CCGGCuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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