miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12353 3' -54.7 NC_003324.1 + 21262 0.72 0.39474
Target:  5'- uGAGCGGAUUGCCc-GACGcuGCCGcuuucaucucgGCCg -3'
miRNA:   3'- gCUCGUCUAACGGuuCUGC--CGGC-----------UGG- -5'
12353 3' -54.7 NC_003324.1 + 24384 0.71 0.461374
Target:  5'- aCGGGCug---GCCGAGAUGGUCGGgCa -3'
miRNA:   3'- -GCUCGucuaaCGGUUCUGCCGGCUgG- -5'
12353 3' -54.7 NC_003324.1 + 7850 0.71 0.471374
Target:  5'- --cGCAGAaUGgCGGGGCGGCaguGACCg -3'
miRNA:   3'- gcuCGUCUaACgGUUCUGCCGg--CUGG- -5'
12353 3' -54.7 NC_003324.1 + 44424 0.7 0.500973
Target:  5'- gCGGGCAccGGgcGCCGAGACuucggucgcugauGGCCGGCg -3'
miRNA:   3'- -GCUCGU--CUaaCGGUUCUG-------------CCGGCUGg -5'
12353 3' -54.7 NC_003324.1 + 20787 0.68 0.620174
Target:  5'- --cGcCGGAacgUUGgCGAGGCGGCgGACCg -3'
miRNA:   3'- gcuC-GUCU---AACgGUUCUGCCGgCUGG- -5'
12353 3' -54.7 NC_003324.1 + 28112 0.69 0.609209
Target:  5'- cCGGGUucucgaucgAGAUauccaacccGCCAAGgcggauGCGGCCGACCu -3'
miRNA:   3'- -GCUCG---------UCUAa--------CGGUUC------UGCCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 32033 0.69 0.565634
Target:  5'- uGAGCuGucUGCCGGcGGCGGCucaCGGCCg -3'
miRNA:   3'- gCUCGuCuaACGGUU-CUGCCG---GCUGG- -5'
12353 3' -54.7 NC_003324.1 + 113 0.7 0.554854
Target:  5'- -aAGCAGAuUUGCC-AGACGGCguucagccgGACCa -3'
miRNA:   3'- gcUCGUCU-AACGGuUCUGCCGg--------CUGG- -5'
12353 3' -54.7 NC_003324.1 + 52964 0.7 0.522909
Target:  5'- -aAGguGAcgcGCCGAGACGaGCgCGACCu -3'
miRNA:   3'- gcUCguCUaa-CGGUUCUGC-CG-GCUGG- -5'
12353 3' -54.7 NC_003324.1 + 1766 0.67 0.685838
Target:  5'- gGAGauCAGcgUGCCAGGACGaaCCG-CCg -3'
miRNA:   3'- gCUC--GUCuaACGGUUCUGCc-GGCuGG- -5'
12353 3' -54.7 NC_003324.1 + 600 0.67 0.685838
Target:  5'- -cGGUAGAUgGUCGAG-CuGCCGACCu -3'
miRNA:   3'- gcUCGUCUAaCGGUUCuGcCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 43676 0.67 0.697744
Target:  5'- uCGAGCGcGAccGCCAAGuaucaggcccucaauCGGCUGACg -3'
miRNA:   3'- -GCUCGU-CUaaCGGUUCu--------------GCCGGCUGg -5'
12353 3' -54.7 NC_003324.1 + 26895 0.67 0.703132
Target:  5'- gGAGCGGcgccaaagccaGCCAAGcgcACGGCCGcgucuGCCa -3'
miRNA:   3'- gCUCGUCuaa--------CGGUUC---UGCCGGC-----UGG- -5'
12353 3' -54.7 NC_003324.1 + 31180 0.67 0.707429
Target:  5'- cCGAGCAGcagcgcAUUGCCGcaaGGAcCGGCacggacaaucaGGCCg -3'
miRNA:   3'- -GCUCGUC------UAACGGU---UCU-GCCGg----------CUGG- -5'
12353 3' -54.7 NC_003324.1 + 3154 0.66 0.739239
Target:  5'- aGAGCGGGagcGCCGu-GCGGCCauugagagaGACCg -3'
miRNA:   3'- gCUCGUCUaa-CGGUucUGCCGG---------CUGG- -5'
12353 3' -54.7 NC_003324.1 + 31621 0.66 0.739239
Target:  5'- gCGGGCGcgcguGGcgGCCAuucucacgacgaGGACGGCgGACUg -3'
miRNA:   3'- -GCUCGU-----CUaaCGGU------------UCUGCCGgCUGG- -5'
12353 3' -54.7 NC_003324.1 + 57134 0.66 0.749642
Target:  5'- ---uCAGAagGCCAAGACGGCUuGCg -3'
miRNA:   3'- gcucGUCUaaCGGUUCUGCCGGcUGg -5'
12353 3' -54.7 NC_003324.1 + 13532 0.66 0.749642
Target:  5'- gCGAGCAGcuuAUUGaacuCCGcGGCGGCgGugCa -3'
miRNA:   3'- -GCUCGUC---UAAC----GGUuCUGCCGgCugG- -5'
12353 3' -54.7 NC_003324.1 + 29581 0.66 0.780094
Target:  5'- aGAGCAGAagccggUUaCCGAGAUGcGcCCGACg -3'
miRNA:   3'- gCUCGUCU------AAcGGUUCUGC-C-GGCUGg -5'
12353 3' -54.7 NC_003324.1 + 24929 1.12 0.000797
Target:  5'- gCGAGCAGAUUGCCAAGACGGCCGACCu -3'
miRNA:   3'- -GCUCGUCUAACGGUUCUGCCGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.