miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12353 3' -54.7 NC_003324.1 + 37466 0.67 0.685838
Target:  5'- gGAGCcgGGGUcuCCGGGAUGGgCGACUg -3'
miRNA:   3'- gCUCG--UCUAacGGUUCUGCCgGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 20787 0.68 0.620174
Target:  5'- --cGcCGGAacgUUGgCGAGGCGGCgGACCg -3'
miRNA:   3'- gcuC-GUCU---AACgGUUCUGCCGgCUGG- -5'
12353 3' -54.7 NC_003324.1 + 32177 0.68 0.620174
Target:  5'- -cAGguGAUUGCCGAcGCGcGUCGugCg -3'
miRNA:   3'- gcUCguCUAACGGUUcUGC-CGGCugG- -5'
12353 3' -54.7 NC_003324.1 + 24556 0.68 0.642126
Target:  5'- aGAGCAG--UGCCGgaAGaucgucaccgcuGCGGgCGACCa -3'
miRNA:   3'- gCUCGUCuaACGGU--UC------------UGCCgGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 38006 0.68 0.642126
Target:  5'- gGAGCGG-UUGCggcgcaCGGGGCGcgucaacauuccGCCGACCg -3'
miRNA:   3'- gCUCGUCuAACG------GUUCUGC------------CGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 16116 0.68 0.649804
Target:  5'- gCGAGguGGUccUGCgCAGGGCgcuucgguagcgggGGCCGcGCCa -3'
miRNA:   3'- -GCUCguCUA--ACG-GUUCUG--------------CCGGC-UGG- -5'
12353 3' -54.7 NC_003324.1 + 53110 0.68 0.653093
Target:  5'- uGAGCAcg--GCC-AGACGGucuggcuccCCGACCg -3'
miRNA:   3'- gCUCGUcuaaCGGuUCUGCC---------GGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 20492 0.68 0.664041
Target:  5'- gGAGCGGGaugUUGCgAuugagcgaGGGCGugcccGCCGACCg -3'
miRNA:   3'- gCUCGUCU---AACGgU--------UCUGC-----CGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 15591 0.68 0.674959
Target:  5'- -cGGCAGA-UGCCAAGGCGGgagcgaGGCUu -3'
miRNA:   3'- gcUCGUCUaACGGUUCUGCCgg----CUGG- -5'
12353 3' -54.7 NC_003324.1 + 28112 0.69 0.609209
Target:  5'- cCGGGUucucgaucgAGAUauccaacccGCCAAGgcggauGCGGCCGACCu -3'
miRNA:   3'- -GCUCG---------UCUAa--------CGGUUC------UGCCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 32033 0.69 0.565634
Target:  5'- uGAGCuGucUGCCGGcGGCGGCucaCGGCCg -3'
miRNA:   3'- gCUCGuCuaACGGUU-CUGCCG---GCUGG- -5'
12353 3' -54.7 NC_003324.1 + 113 0.7 0.554854
Target:  5'- -aAGCAGAuUUGCC-AGACGGCguucagccgGACCa -3'
miRNA:   3'- gcUCGUCU-AACGGuUCUGCCGg--------CUGG- -5'
12353 3' -54.7 NC_003324.1 + 49116 0.75 0.288696
Target:  5'- uGAcGC-GAUcGCCAAGAUGGCgGGCCg -3'
miRNA:   3'- gCU-CGuCUAaCGGUUCUGCCGgCUGG- -5'
12353 3' -54.7 NC_003324.1 + 16227 0.73 0.384847
Target:  5'- gGGGCAGGccgUGCCGAcGCGGCCagcgcagGGCCc -3'
miRNA:   3'- gCUCGUCUa--ACGGUUcUGCCGG-------CUGG- -5'
12353 3' -54.7 NC_003324.1 + 15439 0.73 0.385739
Target:  5'- gGAGCAGuuugacgcgaagGUUGCCAGGGgcgaGGCCaaGGCCg -3'
miRNA:   3'- gCUCGUC------------UAACGGUUCUg---CCGG--CUGG- -5'
12353 3' -54.7 NC_003324.1 + 21262 0.72 0.39474
Target:  5'- uGAGCGGAUUGCCc-GACGcuGCCGcuuucaucucgGCCg -3'
miRNA:   3'- gCUCGUCUAACGGuuCUGC--CGGC-----------UGG- -5'
12353 3' -54.7 NC_003324.1 + 24384 0.71 0.461374
Target:  5'- aCGGGCug---GCCGAGAUGGUCGGgCa -3'
miRNA:   3'- -GCUCGucuaaCGGUUCUGCCGGCUgG- -5'
12353 3' -54.7 NC_003324.1 + 7850 0.71 0.471374
Target:  5'- --cGCAGAaUGgCGGGGCGGCaguGACCg -3'
miRNA:   3'- gcuCGUCUaACgGUUCUGCCGg--CUGG- -5'
12353 3' -54.7 NC_003324.1 + 44424 0.7 0.500973
Target:  5'- gCGGGCAccGGgcGCCGAGACuucggucgcugauGGCCGGCg -3'
miRNA:   3'- -GCUCGU--CUaaCGGUUCUG-------------CCGGCUGg -5'
12353 3' -54.7 NC_003324.1 + 52964 0.7 0.522909
Target:  5'- -aAGguGAcgcGCCGAGACGaGCgCGACCu -3'
miRNA:   3'- gcUCguCUaa-CGGUUCUGC-CG-GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.