miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12353 3' -54.7 NC_003324.1 + 113 0.7 0.554854
Target:  5'- -aAGCAGAuUUGCC-AGACGGCguucagccgGACCa -3'
miRNA:   3'- gcUCGUCU-AACGGuUCUGCCGg--------CUGG- -5'
12353 3' -54.7 NC_003324.1 + 500 0.66 0.780094
Target:  5'- aGAGguGAUggcgaucaCCAAGGuCGGCagcuCGACCa -3'
miRNA:   3'- gCUCguCUAac------GGUUCU-GCCG----GCUGG- -5'
12353 3' -54.7 NC_003324.1 + 600 0.67 0.685838
Target:  5'- -cGGUAGAUgGUCGAG-CuGCCGACCu -3'
miRNA:   3'- gcUCGUCUAaCGGUUCuGcCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 1163 0.67 0.718121
Target:  5'- gCGAGCGGGaaGCCGcgaaagAGACGcugaaauCCGGCCg -3'
miRNA:   3'- -GCUCGUCUaaCGGU------UCUGCc------GGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 1766 0.67 0.685838
Target:  5'- gGAGauCAGcgUGCCAGGACGaaCCG-CCg -3'
miRNA:   3'- gCUC--GUCuaACGGUUCUGCc-GGCuGG- -5'
12353 3' -54.7 NC_003324.1 + 3154 0.66 0.739239
Target:  5'- aGAGCGGGagcGCCGu-GCGGCCauugagagaGACCg -3'
miRNA:   3'- gCUCGUCUaa-CGGUucUGCCGG---------CUGG- -5'
12353 3' -54.7 NC_003324.1 + 7470 0.67 0.685838
Target:  5'- uCGAGCAGGaaGCCGGGcaGCGuGCgGGCa -3'
miRNA:   3'- -GCUCGUCUaaCGGUUC--UGC-CGgCUGg -5'
12353 3' -54.7 NC_003324.1 + 7850 0.71 0.471374
Target:  5'- --cGCAGAaUGgCGGGGCGGCaguGACCg -3'
miRNA:   3'- gcuCGUCUaACgGUUCUGCCGg--CUGG- -5'
12353 3' -54.7 NC_003324.1 + 12795 0.68 0.642126
Target:  5'- aCGAGCGca---CUAAGaACGGCUGACCa -3'
miRNA:   3'- -GCUCGUcuaacGGUUC-UGCCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 13532 0.66 0.749642
Target:  5'- gCGAGCAGcuuAUUGaacuCCGcGGCGGCgGugCa -3'
miRNA:   3'- -GCUCGUC---UAAC----GGUuCUGCCGgCugG- -5'
12353 3' -54.7 NC_003324.1 + 15439 0.73 0.385739
Target:  5'- gGAGCAGuuugacgcgaagGUUGCCAGGGgcgaGGCCaaGGCCg -3'
miRNA:   3'- gCUCGUC------------UAACGGUUCUg---CCGG--CUGG- -5'
12353 3' -54.7 NC_003324.1 + 15591 0.68 0.674959
Target:  5'- -cGGCAGA-UGCCAAGGCGGgagcgaGGCUu -3'
miRNA:   3'- gcUCGUCUaACGGUUCUGCCgg----CUGG- -5'
12353 3' -54.7 NC_003324.1 + 16116 0.68 0.649804
Target:  5'- gCGAGguGGUccUGCgCAGGGCgcuucgguagcgggGGCCGcGCCa -3'
miRNA:   3'- -GCUCguCUA--ACG-GUUCUG--------------CCGGC-UGG- -5'
12353 3' -54.7 NC_003324.1 + 16227 0.73 0.384847
Target:  5'- gGGGCAGGccgUGCCGAcGCGGCCagcgcagGGCCc -3'
miRNA:   3'- gCUCGUCUa--ACGGUUcUGCCGG-------CUGG- -5'
12353 3' -54.7 NC_003324.1 + 16805 0.68 0.63115
Target:  5'- cCGGGCAGAUUGCCcAGcGCuGCauCGACa -3'
miRNA:   3'- -GCUCGUCUAACGGuUC-UGcCG--GCUGg -5'
12353 3' -54.7 NC_003324.1 + 18240 0.66 0.770081
Target:  5'- gCGGuCAGGUUGCCAucGACGacagaGCCGcgACCg -3'
miRNA:   3'- -GCUcGUCUAACGGUu-CUGC-----CGGC--UGG- -5'
12353 3' -54.7 NC_003324.1 + 18370 0.69 0.587347
Target:  5'- gGGGCAgcGAUUGCCc--GCGcGUCGGCCg -3'
miRNA:   3'- gCUCGU--CUAACGGuucUGC-CGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 18989 0.66 0.780094
Target:  5'- cCGAGCGGGaaauacggcgGCUGcacGCGGCUGGCCu -3'
miRNA:   3'- -GCUCGUCUaa--------CGGUuc-UGCCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 20492 0.68 0.664041
Target:  5'- gGAGCGGGaugUUGCgAuugagcgaGGGCGugcccGCCGACCg -3'
miRNA:   3'- gCUCGUCU---AACGgU--------UCUGC-----CGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 20787 0.68 0.620174
Target:  5'- --cGcCGGAacgUUGgCGAGGCGGCgGACCg -3'
miRNA:   3'- gcuC-GUCU---AACgGUUCUGCCGgCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.