miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12353 3' -54.7 NC_003324.1 + 21168 0.73 0.36815
Target:  5'- cCGAcGCAGcacgcGCCGcGGCGGCCGACa -3'
miRNA:   3'- -GCU-CGUCuaa--CGGUuCUGCCGGCUGg -5'
12353 3' -54.7 NC_003324.1 + 21262 0.72 0.39474
Target:  5'- uGAGCGGAUUGCCc-GACGcuGCCGcuuucaucucgGCCg -3'
miRNA:   3'- gCUCGUCUAACGGuuCUGC--CGGC-----------UGG- -5'
12353 3' -54.7 NC_003324.1 + 22678 0.67 0.685838
Target:  5'- aCGcGGCAGGcaGCCAaaAGGCcGCCGAUCu -3'
miRNA:   3'- -GC-UCGUCUaaCGGU--UCUGcCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 24138 0.69 0.609209
Target:  5'- gCGAGaAGGUaaagcccgccagUGCCGAGAaGGCCG-CCa -3'
miRNA:   3'- -GCUCgUCUA------------ACGGUUCUgCCGGCuGG- -5'
12353 3' -54.7 NC_003324.1 + 24384 0.71 0.461374
Target:  5'- aCGGGCug---GCCGAGAUGGUCGGgCa -3'
miRNA:   3'- -GCUCGucuaaCGGUUCUGCCGGCUgG- -5'
12353 3' -54.7 NC_003324.1 + 24556 0.68 0.642126
Target:  5'- aGAGCAG--UGCCGgaAGaucgucaccgcuGCGGgCGACCa -3'
miRNA:   3'- gCUCGUCuaACGGU--UC------------UGCCgGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 24828 0.66 0.759926
Target:  5'- -aGGCGGAUcgcGCCGAcaaGGUCGGCCg -3'
miRNA:   3'- gcUCGUCUAa--CGGUUcugCCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 24929 1.12 0.000797
Target:  5'- gCGAGCAGAUUGCCAAGACGGCCGACCu -3'
miRNA:   3'- -GCUCGUCUAACGGUUCUGCCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 25540 0.74 0.318761
Target:  5'- aCGAGCAaagcAUgcucGCCAAGugGGUCGGCUg -3'
miRNA:   3'- -GCUCGUc---UAa---CGGUUCugCCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 25696 0.69 0.598264
Target:  5'- -cAGCAGccgUGCCGgcgcAGcaGCGGCCGACa -3'
miRNA:   3'- gcUCGUCua-ACGGU----UC--UGCCGGCUGg -5'
12353 3' -54.7 NC_003324.1 + 26199 0.65 0.788975
Target:  5'- uCGAGauCAGGUaGCCgAAGGCccguucgGGCCGAUCc -3'
miRNA:   3'- -GCUC--GUCUAaCGG-UUCUG-------CCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 26895 0.67 0.703132
Target:  5'- gGAGCGGcgccaaagccaGCCAAGcgcACGGCCGcgucuGCCa -3'
miRNA:   3'- gCUCGUCuaa--------CGGUUC---UGCCGGC-----UGG- -5'
12353 3' -54.7 NC_003324.1 + 28112 0.69 0.609209
Target:  5'- cCGGGUucucgaucgAGAUauccaacccGCCAAGgcggauGCGGCCGACCu -3'
miRNA:   3'- -GCUCG---------UCUAa--------CGGUUC------UGCCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 29238 0.72 0.412211
Target:  5'- gCGAGCAGGUcauUGCCAAGaagcuugGCGGCaCGuCUc -3'
miRNA:   3'- -GCUCGUCUA---ACGGUUC-------UGCCG-GCuGG- -5'
12353 3' -54.7 NC_003324.1 + 29581 0.66 0.780094
Target:  5'- aGAGCAGAagccggUUaCCGAGAUGcGcCCGACg -3'
miRNA:   3'- gCUCGUCU------AAcGGUUCUGC-C-GGCUGg -5'
12353 3' -54.7 NC_003324.1 + 30808 0.68 0.674959
Target:  5'- cCGAGCAGc------AGGCGGCCGACg -3'
miRNA:   3'- -GCUCGUCuaacgguUCUGCCGGCUGg -5'
12353 3' -54.7 NC_003324.1 + 31180 0.67 0.707429
Target:  5'- cCGAGCAGcagcgcAUUGCCGcaaGGAcCGGCacggacaaucaGGCCg -3'
miRNA:   3'- -GCUCGUC------UAACGGU---UCU-GCCGg----------CUGG- -5'
12353 3' -54.7 NC_003324.1 + 31621 0.66 0.739239
Target:  5'- gCGGGCGcgcguGGcgGCCAuucucacgacgaGGACGGCgGACUg -3'
miRNA:   3'- -GCUCGU-----CUaaCGGU------------UCUGCCGgCUGG- -5'
12353 3' -54.7 NC_003324.1 + 32033 0.69 0.565634
Target:  5'- uGAGCuGucUGCCGGcGGCGGCucaCGGCCg -3'
miRNA:   3'- gCUCGuCuaACGGUU-CUGCCG---GCUGG- -5'
12353 3' -54.7 NC_003324.1 + 32177 0.68 0.620174
Target:  5'- -cAGguGAUUGCCGAcGCGcGUCGugCg -3'
miRNA:   3'- gcUCguCUAACGGUUcUGC-CGGCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.